RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 RBFOX2O43251 390 aaKnown RBP eCLIP8.3□□□□□ -1.08
TMEM260-211ENST00000556648 DEFA4P12838 97 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 NQO2P16083 231 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 VDAC2P45880 294 aaPredicted RBP8.3□□□□□ -1.08
TMEM260-211ENST00000556648 ERVK-16P61578 105 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 AARDQ4LEZ3 155 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 OR4A16Q8NH70 328 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 OR4S2Q8NH73 311 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 TMEM170AQ8WVE7 144 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 RNASE6Q93091 150 aaKnown RBP8.3□□□□□ -1.08
TMEM260-211ENST00000556648 DIRC2Q96SL1 478 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 LINC00574Q9H8X3 128 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 SLC25A22Q9H936 323 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 TMEM106BQ9NUM4 274 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 NDRG3Q9UGV2 375 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 RPUSD1Q9UJJ7 312 aaKnown RBP8.3□□□□□ -1.08
TMEM260-211ENST00000556648 CEP295Q9C0D2 2601 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 TRAV1-1A0A0B4J248 108 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 TRAV38-1A0A0B4J264 116 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.3□□□□□ -1.08
TMEM260-211ENST00000556648 ZFP92A6NM28 416 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 RRHO14718 337 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 SIAH2O43255 324 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 HBE1P02100 147 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 ARG1P05089 322 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 VWC2Q2TAL6 325 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 SOHLH1Q5JUK2 328 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 OR10P1Q8NGE3 313 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 FAM216AQ8WUB2 273 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 MBD3L1Q8WWY6 194 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 ISOC2Q96AB3 205 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 DYNLRB1Q9NP97 96 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 GAB2Q9UQC2 676 aa8.3□□□□□ -1.08
TMEM260-211ENST00000556648 PPIAL4EA0A075B759 164 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 A0A1W2PPE2 198 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 A0A1W2PPH5 198 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 hADV38S2A0JD32 116 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 MAP1LC3B2A6NCE7 125 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 PPIAL4DF5H284 164 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 TNFRSF13BO14836 293 aaPredicted RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 CT45A6P0DMU7 189 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 CT45A5P0DMU8 189 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 CT45A7P0DMV0 189 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 PPIAL4FP0DN26 164 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 KIR2DS2P43631 304 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 THBS3P49746 956 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 SPCS3P61009 180 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 RPL31P62899 125 aaKnown RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 TMEM200BQ69YZ2 307 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 OR4A47Q6IF82 309 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 SLC25A48Q6ZT89 311 aaKnown RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 RPP25LQ8N5L8 163 aaKnown RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 H1FXQ92522 213 aaKnown RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 CIB3Q96Q77 187 aaPredicted RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 NPCDR1Q9BY65 106 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 MAP1LC3BQ9GZQ8 125 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 EGLN1Q9GZT9 426 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 HIPK2Q9H2X6 1198 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 SMCO4Q9NRQ5 59 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 TCF19Q9Y242 345 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 PPIAL4AQ9Y536 164 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 TIMM9Q9Y5J7 89 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 LINC00312Q9Y6C7 94 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 FAM90A9PA6NNJ1 464 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 IGKV1-16P04430 117 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 MDKP21741 143 aaPredicted RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 CA7P43166 264 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 GNB2P62879 340 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 SERF2P84101 59 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 ATP6V1FQ16864 119 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 FFAR4Q5NUL3 377 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 CENPVQ7Z7K6 275 aaPredicted RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 ABHD12Q8N2K0 398 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 Q8N7P7 452 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 PINX1Q96BK5 328 aaKnown RBP8.29□□□□□ -1.08
TMEM260-211ENST00000556648 TMPRSS5Q9H3S3 457 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 RAB9BQ9NP90 201 aa8.29□□□□□ -1.08
TMEM260-211ENST00000556648 ROS1P08922 2347 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 C15orf61A6NNL5 157 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 LYNX1G3V0Z9 82 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 H3BQ15 152 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 CCL21O00585 134 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 IFNA10P01566 189 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 HSPB1P04792 205 aaKnown RBP8.28□□□□□ -1.08
TMEM260-211ENST00000556648 CRYBA1P05813 215 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 LYNX1P0DP58 116 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 BCL2P10415 239 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 HOXA1P49639 335 aaPredicted RBP8.28□□□□□ -1.08
TMEM260-211ENST00000556648 FAM122CQ6P4D5 195 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 ZFP82Q8N141 532 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 GATAD1Q8WUU5 269 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 HIST1H2BAQ96A08 127 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 RHOVQ96L33 236 aa8.28□□□□□ -1.08
TMEM260-211ENST00000556648 MRPL20Q9BYC9 149 aaKnown RBP8.28□□□□□ -1.08
TMEM260-211ENST00000556648 MAP1BP46821 2468 aaKnown RBP8.27□□□□□ -1.08
TMEM260-211ENST00000556648 SMCO3A2RU48 225 aa8.27□□□□□ -1.09
TMEM260-211ENST00000556648 SRRM4A7MD48 611 aaKnown RBP8.27□□□□□ -1.09
TMEM260-211ENST00000556648 ZNF727A8MUV8 499 aa8.27□□□□□ -1.09
TMEM260-211ENST00000556648 PRSS46E5RG02 174 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms