RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 ZNF837Q96EG3 531 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-220ENST00000555612 FBXL7Q9UJT9 491 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 IGF2P01344 180 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 PMS2P11Q13670 270 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 MESP1Q9BRJ9 268 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 TCF19Q9Y242 345 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 IGHV3OR16-8A0A075B7F1 116 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 ISLRO14498 428 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 ZNF324O75467 553 aaPredicted RBP6.97□□□□□ -1.29
SYNE2-220ENST00000555612 HKR1P10072 659 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 LURAP1Q96LR2 239 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 PACRGQ96M98 296 aaPredicted RBP6.97□□□□□ -1.29
SYNE2-220ENST00000555612 NRIP2Q9BQI9 281 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 IGKV1D-43A0A0B4J1Z2 117 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 A0A0G2JLM5 398 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 PGA5P0DJD9 388 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 RELBQ01201 579 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 C1orf100Q5SVJ3 147 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 NPIPB3Q92617 1050 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 OPN4Q9UHM6 478 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 ZNF318Q5VUA4 2279 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 PNRC1Q12796 327 aaPredicted RBP6.97□□□□□ -1.29
SYNE2-220ENST00000555612 ELF5Q9UKW6 265 aaPredicted RBP6.97□□□□□ -1.29
SYNE2-220ENST00000555612 ABCA7Q8IZY2 2146 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 ZNFX1Q9P2E3 1918 aaKnown RBP6.97□□□□□ -1.29
SYNE2-220ENST00000555612 LOC102723996A0A087X1L8 192 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 DHRS11Q6UWP2 260 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 SELENOHQ8IZQ5 122 aaKnown RBP6.97□□□□□ -1.29
SYNE2-220ENST00000555612 SEMA5BQ9P283 1151 aa6.97□□□□□ -1.29
SYNE2-220ENST00000555612 IGLV3-12A0A075B6K2 115 aa6.96□□□□□ -1.29
SYNE2-220ENST00000555612 ZNF818PQ6ZRF7 136 aa6.96□□□□□ -1.29
SYNE2-220ENST00000555612 C9orf62Q8N4C0 152 aa6.96□□□□□ -1.29
SYNE2-220ENST00000555612 DRAM1Q8N682 238 aa6.96□□□□□ -1.29
SYNE2-220ENST00000555612 ZIC4Q8N9L1 334 aa6.96□□□□□ -1.29
SYNE2-220ENST00000555612 RGP1Q92546 391 aaPredicted RBP6.96□□□□□ -1.29
SYNE2-220ENST00000555612 ARID1AO14497 2285 aa6.96□□□□□ -1.29
SYNE2-220ENST00000555612 ANOS1P23352 680 aa6.96□□□□□ -1.29
SYNE2-220ENST00000555612 DLK1P80370 383 aa6.96□□□□□ -1.29
SYNE2-220ENST00000555612 GSX1Q9H4S2 264 aaPredicted RBP6.96□□□□□ -1.29
SYNE2-220ENST00000555612 HSF4Q9ULV5 492 aa6.96□□□□□ -1.29
SYNE2-220ENST00000555612 C5orf52A6NGY3 159 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 M0R3E3 92 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 KLF7O75840 302 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-220ENST00000555612 APCSP02743 223 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 GPR183P32249 361 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 TCTAP57738 103 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 ZNF56Q15929 161 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 RTN4RL2Q86UN3 420 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 TMEM252Q8N6L7 170 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 OR13A1Q8NGR1 328 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 OR1N2Q8NGR9 330 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 TRBV5-7A0A0A0MS05 114 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 SNURFLB1AK76 121 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 C12orf77C9JDV5 145 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 CCL3L1P16619 93 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 SRSF9Q13242 221 aaKnown RBP eCLIP6.96□□□□□ -1.3
SYNE2-220ENST00000555612 SRSF6Q13247 344 aaKnown RBP6.96□□□□□ -1.3
SYNE2-220ENST00000555612 AWAT1Q58HT5 328 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 LINC01590Q5TEZ4 76 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 CLEC19AQ6UXS0 136 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 ARPC1AQ92747 370 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 SGK494Q96LW2 274 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 PRSS22Q9GZN4 317 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 DNAJC4Q9NNZ3 241 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 TRAV40A0A0B4J280 105 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 C9JCJ5 164 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 MPDU1O75352 247 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 BTF3P20290 206 aaKnown RBP6.96□□□□□ -1.3
SYNE2-220ENST00000555612 IFITM2Q01629 132 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 CD69Q07108 199 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 WDR25Q64LD2 544 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-220ENST00000555612 CRIPAKQ8N1N5 446 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 STPG2Q8N412 459 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 MAP1LC3CQ9BXW4 147 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 RP1P56715 2156 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 KLK2P20151 261 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 RPL29P47914 159 aaKnown RBP6.96□□□□□ -1.3
SYNE2-220ENST00000555612 FOXF2Q12947 444 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 NRN1LQ496H8 165 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 SMUG1Q53HV7 270 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 OR10D4PQ8NGN7 298 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 C8orf46Q8TAG6 207 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 ZNF502Q8TBZ5 544 aa6.96□□□□□ -1.3
SYNE2-220ENST00000555612 LOC390937A0A1W2PQ73 354 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 FOXI3A8MTJ6 420 aaPredicted RBP6.95□□□□□ -1.3
SYNE2-220ENST00000555612 SIAH2O43255 324 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 CD24P25063 80 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 TNFRSF9Q07011 255 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 HERPUD1Q15011 391 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 NPIPB13A6NJU9 1138 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 NPIPB4C9JG80 1138 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 AMY1AP04745 511 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 POC1AQ8NBT0 407 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 OR11H7Q8NGC8 314 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 LHFPL5Q8TAF8 219 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 TMEM191AQ9H0A3 160 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 MOB4Q9Y3A3 225 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 MRPS18CQ9Y3D5 142 aaKnown RBP6.95□□□□□ -1.3
SYNE2-220ENST00000555612 MIA3Q5JRA6 1907 aa6.95□□□□□ -1.3
SYNE2-220ENST00000555612 TCRBV4S1A1TA0A5B7 111 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms