RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ACOT12Q8WYK0 555 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 OR5B12Q96R08 314 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 ZNF430Q9H8G1 570 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 TNCP24821 2201 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 IGHV4OR15-8A0A075B7B6 117 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 A0A087WW49 117 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 APOA1P02647 267 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 FGF2P09038 288 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 BRWD1-AS2P59051 145 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 TAS2R20P59543 309 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 TMEM69Q5SWH9 247 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 MFSD4AQ8N468 514 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 ADAD2Q8NCV1 583 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 CASTOR1Q8WTX7 329 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 SRSF12Q8WXF0 261 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 DCUN1D4Q92564 292 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 BORCS5Q969J3 196 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 USMG5Q96IX5 58 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 SPIN2AQ99865 258 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 SPIN2BQ9BPZ2 258 aa12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 ALX4Q9H161 411 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-209ENST00000554872 GABARAPO95166 117 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 OR9G9P0C7N8 305 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 SMIM18P0DKX4 95 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 MAS1LP35410 378 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 NCS1P62166 190 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 LSM3P62310 102 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 TNXAQ16473 311 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 ACSM6Q6P461 480 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 DHRS11Q6UWP2 260 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 PUSL1Q8N0Z8 303 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 TMEM167AQ8TBQ9 72 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 TCTEX1D2Q8WW35 142 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 DLX4Q92988 240 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 MS4A10Q96PG2 267 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 B9D2Q9BPU9 175 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 AIFM2Q9BRQ8 373 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 RANGRFQ9HD47 186 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 IFT46Q9NQC8 304 aa12.36□□□□□ -0.43
CCDC88C-209ENST00000554872 C13orf42A0A1B0GVH6 325 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 MSGN1A6NI15 193 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 J3QRK9 145 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 ACTL6BO94805 426 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 KBTBD11O94819 623 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 OR2A4O95047 310 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 HRASP01112 189 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 PTHLHP12272 177 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 ZP3P21754 424 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 TAS2R46P59540 309 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 DYRK1AQ13627 763 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 POU2AF1Q16633 256 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 ZNF343Q6P1L6 599 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 IDO2Q6ZQW0 420 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 ANKRD13BQ86YJ7 626 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 OR5T1Q8NG75 326 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 OR2A7Q96R45 310 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 TAS2R8Q9NYW2 309 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 ADAM30Q9UKF2 790 aa12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 ZNF256Q9Y2P7 627 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 LSM4Q9Y4Z0 139 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-209ENST00000554872 TRBV9A0A0B4J1U6 114 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 FAM223BA6NKX1 122 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 IGHV3-11P01762 117 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 PRSS3P35030 304 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 SLURP1P55000 103 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 VBP1P61758 197 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 CATR1Q13166 79 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 CTF1Q16619 201 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 KLK9Q2XQG4 91 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 FAM209BQ5JX69 171 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 SLC25A42Q86VD7 318 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 FAM223AQ8IWN6 122 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 TTC9CQ8N5M4 171 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 OR4A5Q8NH83 315 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 CD300LFQ8TDQ1 290 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 GPX8Q8TED1 209 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 SECTM1Q8WVN6 248 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 PHB2Q99623 299 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 DCUN1D5Q9BTE7 237 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 SLC5A7Q9GZV3 580 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 SCPEP1Q9HB40 452 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 CCL28Q9NRJ3 127 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 KLK9Q9UKQ9 250 aa12.34□□□□□ -0.43
CCDC88C-209ENST00000554872 TPPPO94811 219 aa12.33□□□□□ -0.44
CCDC88C-209ENST00000554872 EIF4EP06730 217 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-209ENST00000554872 OR2B11Q5JQS5 317 aa12.33□□□□□ -0.44
CCDC88C-209ENST00000554872 CADM3Q8N126 398 aa12.33□□□□□ -0.44
CCDC88C-209ENST00000554872 MOB3AQ96BX8 217 aa12.33□□□□□ -0.44
CCDC88C-209ENST00000554872 ZNF355PQ9NSJ1 428 aa12.33□□□□□ -0.44
CCDC88C-209ENST00000554872 COA4Q9NYJ1 87 aa12.33□□□□□ -0.44
CCDC88C-209ENST00000554872 BET1LQ9NYM9 111 aa12.33□□□□□ -0.44
CCDC88C-209ENST00000554872 ZNF257Q9Y2Q1 563 aa12.33□□□□□ -0.44
CCDC88C-209ENST00000554872 NPIPB5A8MRT5 1133 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 TEX22C9J3V5 150 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 SULT1C2O00338 296 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 ZNF735P0CB33 412 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 GNRHRP30968 328 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 ECI1P42126 302 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 RORCP51449 518 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 TAS2R31P59538 309 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms