RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ZBTB34Q8NCN2 500 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 R3HDM4Q96D70 268 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 WFIKKN1Q96NZ8 548 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 ACTR3CQ9C0K3 210 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-213ENST00000552720 SRD5A3Q9H8P0 318 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 ROS1P08922 2347 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 TTC28Q96AY4 2481 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 SMCO3A2RU48 225 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 C11orf94C9JXX5 98 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 C15orf65H3BRN8 121 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 J3QW42 95 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 RRHO14718 337 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 IGKV3-15P01624 115 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 AMBPP02760 352 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 CDC34P49427 236 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-213ENST00000552720 CCL11P51671 97 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 FAM3BP58499 235 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-213ENST00000552720 ATP6V1FQ16864 119 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 INO80CQ6PI98 192 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-213ENST00000552720 ZNF66Q6ZN08 573 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 C1orf229Q6ZS94 237 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-213ENST00000552720 LRP11Q86VZ4 500 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM178AQ8NBL3 297 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 ZNF114Q8NC26 417 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 LRRC29Q8WV35 223 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM37Q8WXS4 190 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 LEAP2Q969E1 77 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 SDSLQ96GA7 329 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 PYGO2Q9BRQ0 406 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 MRPL37Q9BZE1 423 aaKnown RBP6.23□□□□□ -1.41
LIMA1-213ENST00000552720 CXXC4Q9H2H0 198 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 OR6C3Q9NZP0 311 aa6.23□□□□□ -1.41
LIMA1-213ENST00000552720 XKRY2A2RUG3 117 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM250H0YL14 139 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 CD82P27701 267 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 ZNF134P52741 427 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 GNB1P62873 340 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 DEFA6Q01524 100 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 PMS2P11Q13670 270 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 VWC2Q2TAL6 325 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM183AQ8IXX5 376 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 ZNF709Q8N972 641 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 FDCSPQ8NFU4 85 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 OR1P1Q8NH06 330 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 C14orf144Q96I85 54 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 KRTAP3-3Q9BYR6 98 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 KRTAP3-2Q9BYR7 98 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 PITPNC1Q9UKF7 332 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 FUT9Q9Y231 359 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-213ENST00000552720 A0A1B0GUS0 222 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 PPP5D1E7EU14 171 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 C1QTNF9P0C862 333 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 SELLP14151 372 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 HNF1AP20823 631 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 CD1BP29016 333 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 DUTP33316 252 aaKnown RBP6.22□□□□□ -1.41
LIMA1-213ENST00000552720 GNB2P62879 340 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 GUSBP1Q15486 140 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 PLA2G2CQ5R387 149 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 CST9LP1Q5W188 147 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 ABHD12Q8N2K0 398 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 ZNRF1Q8ND25 227 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 OR2Z1Q8NG97 314 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 NEIL1Q96FI4 390 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-213ENST00000552720 OR5B12Q96R08 314 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 TAAR6Q96RI8 345 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 OPN3Q9H1Y3 402 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-213ENST00000552720 MANBALQ9NQG1 85 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 DUSP13Q9UII6 198 aa6.22□□□□□ -1.41
LIMA1-213ENST00000552720 IGKV1D-17A0A075B6S4 117 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 IGHV1-18A0A0C4DH31 117 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 SLC31A2O15432 143 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 NDUFB4O95168 129 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 HRASP01112 189 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 IFNA10P01566 189 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 MBP02144 154 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 GZMBP10144 247 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 MYOD1P15172 320 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 WT1P19544 449 aaPredicted RBP6.21□□□□□ -1.41
LIMA1-213ENST00000552720 HOXC12P31275 282 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 PRDX2P32119 198 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 GPR12P47775 334 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 FAM201AQ5SY85 155 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 PRAMEF5Q5TYX0 476 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 FAM78BQ5VT40 261 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 TMEM170AQ8WVE7 144 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 HSD17B10Q99714 261 aaKnown RBP6.21□□□□□ -1.41
LIMA1-213ENST00000552720 GNG12Q9UBI6 72 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 WDR83OSQ9Y284 106 aa6.21□□□□□ -1.41
LIMA1-213ENST00000552720 LRBAP50851 2863 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 BSNQ9UPA5 3926 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 PCNX1Q96RV3 2341 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 ZZEF1O43149 2961 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 TRBV20OR9-2A0A075B6H5 130 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 IGHV2OR16-5A0A0B4J2B6 119 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 M0R1X1 148 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 TGOLN2O43493 480 aa6.21□□□□□ -1.42
LIMA1-213ENST00000552720 GATCO43716 136 aaKnown RBP6.21□□□□□ -1.42
LIMA1-213ENST00000552720 SMIM21Q3B7S5 101 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms