RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ASH1LQ9NR48 2969 aaKnown RBP12.52□□□□□ -0.41
USP28-214ENST00000545540 A0A1B0GV90 55 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 PPP5D1E7EU14 171 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 AQP7O14520 342 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 SLC31A2O15432 143 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 LINC00469Q8N7U9 141 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 PINX1Q96BK5 328 aaKnown RBP12.52□□□□□ -0.41
USP28-214ENST00000545540 OOEPA6NGQ2 149 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 KBTBD11O94819 623 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 PFN1P07737 140 aaKnown RBP12.51□□□□□ -0.41
USP28-214ENST00000545540 SP9P0CG40 484 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 ZNF83P51522 516 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 CATR1Q13166 79 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 PRAMEF5Q5TYX0 476 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 Q8IYB0 196 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 RPRMLQ8N4K4 120 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 Q8TCH9 128 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 POM121Q96HA1 1249 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 TET2Q6N021 2002 aaPredicted RBP12.51□□□□□ -0.41
USP28-214ENST00000545540 NPIPB11E5RHQ5 1161 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 KIR2DL2P43627 348 aaPredicted RBP12.51□□□□□ -0.41
USP28-214ENST00000545540 PNRC1Q12796 327 aaPredicted RBP12.51□□□□□ -0.41
USP28-214ENST00000545540 OR5B12Q96R08 314 aa12.51□□□□□ -0.41
USP28-214ENST00000545540 CTXND1A0A1B0GTU2 59 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 C15orf62A8K5M9 175 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 IQCF6A8MYZ5 107 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 SPRY3O43610 288 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 AMBPP02760 352 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 COX5AP20674 150 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 GPR12P47775 334 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 TNFSF10P50591 281 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 RND2P52198 227 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 DBX2Q6ZNG2 339 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 TGIF2LYQ8IUE0 185 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 WDR31Q8NA23 367 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 SNRNP40Q96DI7 357 aaKnown RBP12.5□□□□□ -0.41
USP28-214ENST00000545540 GMPPAQ96IJ6 420 aaPredicted RBP12.5□□□□□ -0.41
USP28-214ENST00000545540 ACTR3CQ9C0K3 210 aaPredicted RBP12.5□□□□□ -0.41
USP28-214ENST00000545540 ZNF729A6NN14 1252 aaPredicted RBP12.5□□□□□ -0.41
USP28-214ENST00000545540 RNF212BA8MTL3 300 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 B4DEV8 164 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 ACTL6BO94805 426 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 CDC34P49427 236 aaPredicted RBP12.5□□□□□ -0.41
USP28-214ENST00000545540 SPINK4O60575 86 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 HIST1H1BP16401 226 aaKnown RBP12.5□□□□□ -0.41
USP28-214ENST00000545540 SPATA31B1PQ5VZV4 182 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 CYP2G1PQ6ZSU1 146 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 MOB3BQ86TA1 216 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 C14orf144Q96I85 54 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 AGMATQ9BSE5 352 aa12.5□□□□□ -0.41
USP28-214ENST00000545540 ZNF318Q5VUA4 2279 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 TMEM265A0A087WTH1 108 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 SPAARA0A1B0GVQ0 90 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 GCH1P30793 250 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 PRDX2P32119 198 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 GNB1P62873 340 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 COL27A1Q8IZC6 1860 aaPredicted RBP12.49□□□□□ -0.41
USP28-214ENST00000545540 A0A1W2PPV4 95 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 FRMD6-AS1P0C7T7 363 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 CD1BP29016 333 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 MED13LQ71F56 2210 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 CD82P27701 267 aa12.49□□□□□ -0.41
USP28-214ENST00000545540 CLDN14O95500 239 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 GNG10P50151 68 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 PMS2P11Q13670 270 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 Q6ZT83 130 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 OR6C3Q9NZP0 311 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 DSCAMO60469 2012 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 TRBV24-1A0A075B6N3 115 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 A0A087X0M5 115 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 A0A1B0GX30 115 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 ZNF320A2RRD8 509 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 GRIFINA4D1Z8 144 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 FOXH1O75593 365 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 ARL14EPLP0DKL9 152 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 GATA2P23769 480 aaPredicted RBP12.48□□□□□ -0.41
USP28-214ENST00000545540 MOGAT3Q86VF5 341 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 ZCCHC24Q8N2G6 241 aaKnown RBP12.48□□□□□ -0.41
USP28-214ENST00000545540 TMEM178AQ8NBL3 297 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 OR4A16Q8NH70 328 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 IMMP2LQ96T52 175 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 P2RX4Q99571 388 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 MS4A5Q9H3V2 200 aa12.48□□□□□ -0.41
USP28-214ENST00000545540 IGKV1D-17A0A075B6S4 117 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 NUPR1O60356 82 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 P0C879 139 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 PRR31Q5SQ13 230 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 ZDHHC11Q9H8X9 412 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 DCAF16Q9NXF7 216 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 NAV3Q8IVL0 2385 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 ABCA4P78363 2273 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 APC2O95996 2303 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.47□□□□□ -0.41
USP28-214ENST00000545540 RBFOX2O43251 390 aaKnown RBP eCLIP12.47□□□□□ -0.41
USP28-214ENST00000545540 TMEM256Q8N2U0 113 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 NEIL1Q96FI4 390 aaPredicted RBP12.47□□□□□ -0.41
USP28-214ENST00000545540 CXXC4Q9H2H0 198 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 ZGRF1Q86YA3 2104 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 TRBV20OR9-2A0A075B6H5 130 aa12.47□□□□□ -0.41
USP28-214ENST00000545540 SLC17A3O00476 420 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms