RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TMEM128	Q5BJH2	165 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	LIN54	Q6MZP7	749 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	SLC25A42	Q86VD7	318 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	ZNF695	Q8IW36	515 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	VKORC1L1	Q8N0U8	176 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	NPB	Q8NG41	125 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	RNASE11	Q8TAA1	199 aa	Known RBP	8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	CASTOR1	Q8WTX7	329 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	TMEM230	Q96A57	120 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	R3HDM4	Q96D70	268 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	TP53RK	Q96S44	253 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	PLEKHA2	Q9HB19	425 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	JMJD1C	Q15652	2540 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	SRRM4	A7MD48	611 aa	Known RBP	8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	FGF16	O43320	207 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	SPDEF	O95238	335 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	KRAS	P01116	189 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	VSIG10L2	P0DP72	767 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	UBE2K	P61086	200 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	GNB1	P62873	340 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	BLCAP	P62952	87 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	PPP1R1A	Q13522	171 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	C5orf64	Q2M2E5	130 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	RGS21	Q2M5E4	152 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	ZNF585B	Q52M93	769 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	PRIMA1	Q86XR5	153 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	C5orf56	Q8N8D9	126 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545		Q8N9W7	124 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	RHOV	Q96L33	236 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	PRSS22	Q9GZN4	317 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	TMEM222	Q9H0R3	208 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	PLSCR3	Q9NRY6	295 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	FAM212B	Q9NTI7	297 aa	Predicted RBP	8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	PRR13	Q9NZ81	148 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	COMMD9	Q9P000	198 aa		8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	NSD1	Q96L73	2696 aa	Predicted RBP	8.09	□□□□□ -1.11
CPSF7-221	ENST00000543545	INMT-MINDY4	F8WBC2	141 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	ACTL6B	O94805	426 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	OR2A4	O95047	310 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	CNIH1	O95406	144 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	SFT2D2	O95562	160 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	PTTG1	O95997	202 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	IGLV2-23	P01705	113 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	HLA-A	P01891	365 aa	Known RBP	8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	OR4E1	P0C645	316 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	SAA1	P0DJI8	122 aa	Predicted RBP	8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	UCP1	P25874	307 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	G6PC	P35575	357 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	AKR1C2	P52895	323 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	UBE2M	P61081	183 aa	Known RBP	8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	SRPX	P78539	464 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	TMEM187	Q14656	261 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	TMEM268	Q5VZI3	342 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	H2BFWT	Q7Z2G1	175 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	LGI3	Q8N145	548 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	TEX45	Q8NA69	505 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	DUSP18	Q8NEJ0	188 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	VSTM2A	Q8TAG5	236 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	ABHD5	Q8WTS1	349 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	GLYATL2	Q8WU03	294 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	TAF15	Q92804	592 aa	Known RBP eCLIP	8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	RRNAD1	Q96FB5	475 aa	Known RBP	8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	GALNT14	Q96FL9	552 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	OR2A7	Q96R45	310 aa		8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	ALX4	Q9H161	411 aa	Predicted RBP	8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	RANBP3	Q9H6Z4	567 aa	Predicted RBP	8.08	□□□□□ -1.12
CPSF7-221	ENST00000543545	C9orf170	A2RU37	121 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	MARCH11	A6NNE9	402 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	CREBL2	O60519	120 aa	Predicted RBP	8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	RBMXL2	O75526	392 aa	Known RBP	8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	SNAPC5	O75971	98 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	NDUFA3	O95167	84 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	DHFR	P00374	187 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	SPN	P16150	400 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	RPL15	P61313	204 aa	Known RBP	8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	SUPT4H1	P63272	117 aa	Known RBP	8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	OR4A47	Q6IF82	309 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	LYG2	Q86SG7	212 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	PPP1R27	Q86WC6	154 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	SELENOH	Q8IZQ5	122 aa	Known RBP	8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	FAM71E2	Q8N5Q1	922 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	UXS1	Q8NBZ7	420 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	OR2T6	Q8NHC8	308 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	COQ8A	Q8NI60	647 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	ZFAND2B	Q8WV99	257 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	RBPMS	Q93062	196 aa	Known RBP	8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	GPN1	Q9HCN4	374 aa	Predicted RBP	8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	TPSG1	Q9NRR2	321 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	TMEM140	Q9NV12	185 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	SIGLEC9	Q9Y336	463 aa		8.07	□□□□□ -1.12
CPSF7-221	ENST00000543545	PIGBOS1	A0A0B4J2F0	54 aa		8.06	□□□□□ -1.12
CPSF7-221	ENST00000543545	FCN1	O00602	326 aa		8.06	□□□□□ -1.12
CPSF7-221	ENST00000543545	KBTBD11	O94819	623 aa		8.06	□□□□□ -1.12
CPSF7-221	ENST00000543545	CDS2	O95674	445 aa		8.06	□□□□□ -1.12
CPSF7-221	ENST00000543545	CA2	P00918	260 aa		8.06	□□□□□ -1.12
CPSF7-221	ENST00000543545	IGKV1-39	P01597	117 aa		8.06	□□□□□ -1.12
CPSF7-221	ENST00000543545	IGKV1D-39	P04432	117 aa		8.06	□□□□□ -1.12
CPSF7-221	ENST00000543545	AMY1A	P04745	511 aa		8.06	□□□□□ -1.12
CPSF7-221	ENST00000543545	RAG2	P55895	527 aa		8.06	□□□□□ -1.12
CPSF7-221	ENST00000543545	PJVK	Q0ZLH3	352 aa		8.06	□□□□□ -1.12

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms