RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TMEM128Q5BJH2 165 aa13.61□□□□□ -0.23
LIG1-204ENST00000542460 TP53RKQ96S44 253 aa13.61□□□□□ -0.23
LIG1-204ENST00000542460 PRSS22Q9GZN4 317 aa13.61□□□□□ -0.23
LIG1-204ENST00000542460 COMMD9Q9P000 198 aa13.61□□□□□ -0.23
LIG1-204ENST00000542460 FLVCR2Q9UPI3 526 aa13.61□□□□□ -0.23
LIG1-204ENST00000542460 SLC25A17O43808 307 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 TSPAN9O75954 239 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 S1PR2O95136 353 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 RPA2P15927 270 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 NQO2P16083 231 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 UBE2KP61086 200 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 PLGLAQ15195 96 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 VMA21Q3ZAQ7 101 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 LIN54Q6MZP7 749 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 SLC25A42Q86VD7 318 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 TEX45Q8NA69 505 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 ENKURQ8TC29 256 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 GALNT14Q96FL9 552 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 RHOVQ96L33 236 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 TMEM222Q9H0R3 208 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 FBXL15Q9H469 300 aa13.6□□□□□ -0.23
LIG1-204ENST00000542460 METTL1Q9UBP6 276 aaKnown RBP13.6□□□□□ -0.23
LIG1-204ENST00000542460 ARPC1BO15143 372 aaKnown RBP13.59□□□□□ -0.23
LIG1-204ENST00000542460 OR5AC1P0C628 307 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 UBE2MP61081 183 aaKnown RBP13.59□□□□□ -0.23
LIG1-204ENST00000542460 RELBQ01201 579 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 DHODHQ02127 395 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 SP6Q3SY56 376 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 Q6ZSV7 163 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 C20orf85Q9H1P6 137 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 COL6A5A8TX70 2615 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 NDUFA7O95182 113 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 CRYGBP07316 175 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 HKR1P10072 659 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 ANXA3P12429 323 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 UCP1P25874 307 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 SUPT4H1P63272 117 aaKnown RBP13.59□□□□□ -0.23
LIG1-204ENST00000542460 POU2AF1Q16633 256 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 NRARPQ7Z6K4 114 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 PPP1R27Q86WC6 154 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 VKORC1L1Q8N0U8 176 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.59□□□□□ -0.23
LIG1-204ENST00000542460 DUSP18Q8NEJ0 188 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 VSTM2AQ8TAG5 236 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 GLYATL2Q8WU03 294 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 TAF15Q92804 592 aaKnown RBP eCLIP13.59□□□□□ -0.236e-7■■■■□ 23.8
LIG1-204ENST00000542460 R3HDM4Q96D70 268 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 ZNF702PQ9H963 129 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 NUDT15Q9NV35 164 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 SIGLEC9Q9Y336 463 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 NUBP2Q9Y5Y2 271 aa13.59□□□□□ -0.23
LIG1-204ENST00000542460 SH2D7A6NKC9 451 aaPredicted RBP13.58□□□□□ -0.24
LIG1-204ENST00000542460 OR2A4O95047 310 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 HLA-DRB1P01911 266 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 SAA1P0DJI8 122 aaPredicted RBP13.58□□□□□ -0.24
LIG1-204ENST00000542460 RAG2P55895 527 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 ERVK-16P61578 105 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 TRIM16LQ309B1 348 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 KRTAP24-1Q3LI83 254 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 C9orf152Q5JTZ5 239 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 SSX9Q7RTT3 188 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 Q8N2B8 174 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 DMBX1Q8NFW5 382 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 OR2A7Q96R45 310 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 ALX4Q9H161 411 aaPredicted RBP13.58□□□□□ -0.24
LIG1-204ENST00000542460 C16orf95Q9H693 158 aa13.58□□□□□ -0.24
LIG1-204ENST00000542460 TRAV6A0A075B6T7 132 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 MARCH11A6NNE9 402 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 ATG12O94817 140 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 CDS2O95674 445 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 KRASP01116 189 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 IGKV1-39P01597 117 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 IGKV1D-39P04432 117 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 H2AFB2P0C5Z0 115 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 TMEM187Q14656 261 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 Q6ZS46 218 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 PUSL1Q8N0Z8 303 aaKnown RBP13.57□□□□□ -0.24
LIG1-204ENST00000542460 OR4F5Q8NH21 305 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 OR2T6Q8NHC8 308 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 TMEM158Q8WZ71 300 aa13.57□□□□□ -0.24
LIG1-204ENST00000542460 FCN1O00602 326 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 CREBL2O60519 120 aaPredicted RBP13.56□□□□□ -0.24
LIG1-204ENST00000542460 IGHG2P01859 326 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 OR4E1P0C645 316 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 ANXA7P20073 488 aaKnown RBP13.56□□□□□ -0.24
LIG1-204ENST00000542460 VAMP1P23763 118 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 G6PCP35575 357 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 PPP1R1AQ13522 171 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 ARSJQ5FYB0 599 aaPredicted RBP13.56□□□□□ -0.24
LIG1-204ENST00000542460 OR4A47Q6IF82 309 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 CADM3Q8N126 398 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 SEC22AQ96IW7 307 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 TMEM56Q96MV1 263 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 CLCC1Q96S66 551 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 TPSG1Q9NRR2 321 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 BET1LQ9NYM9 111 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 TMEM56-RWDD3S4R434 201 aa13.56□□□□□ -0.24
LIG1-204ENST00000542460 KCNAB3O43448 404 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 KBTBD11O94819 623 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 SFT2D2O95562 160 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms