RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 ADIRFQ15847 76 aa9.4□□□□□ -0.91
CDH3-203ENST00000542274 HES3Q5TGS1 186 aa9.4□□□□□ -0.91
CDH3-203ENST00000542274 FA2HQ7L5A8 372 aa9.4□□□□□ -0.91
CDH3-203ENST00000542274 CISD2Q8N5K1 135 aaKnown RBP9.4□□□□□ -0.91
CDH3-203ENST00000542274 TMEM251Q8N6I4 163 aa9.4□□□□□ -0.91
CDH3-203ENST00000542274 ATP5SQ99766 215 aa9.4□□□□□ -0.91
CDH3-203ENST00000542274 V9GY05 133 aa9.4□□□□□ -0.91
CDH3-203ENST00000542274 MT-CO3P00414 261 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 EDN2P20800 178 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 MDH2P40926 338 aaKnown RBP9.39□□□□□ -0.91
CDH3-203ENST00000542274 GALR1P47211 349 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 EFNB2P52799 333 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 OR8B8Q15620 311 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 TMEM176BQ3YBM2 270 aaPredicted RBP9.39□□□□□ -0.91
CDH3-203ENST00000542274 FOXI2Q6ZQN5 318 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 C16orf82Q7Z2V1 217 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 ATOH7Q8N100 152 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 DEFB124Q8NES8 71 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 CST11Q9H112 138 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 CALHM2Q9HA72 323 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 SH2D2AQ9NP31 389 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 CEP250Q9BV73 2442 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 SPTBN2O15020 2390 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 C7orf71A4D174 169 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 GRIFINA4D1Z8 144 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 AMY2AP04746 511 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 CELA3BP08861 270 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 ZNF17P17021 662 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 NPY1RP25929 384 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 ATP6V0CP27449 155 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 GLRXP35754 106 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 OR3A4PP47883 348 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 C8orf86Q6ZUL3 223 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 CT55Q8WUE5 264 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 FAM103A1Q9BTL3 118 aaKnown RBP9.39□□□□□ -0.91
CDH3-203ENST00000542274 MS4A5Q9H3V2 200 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 C19orf25Q9UFG5 118 aaPredicted RBP9.39□□□□□ -0.91
CDH3-203ENST00000542274 GVINP1Q7Z2Y8 2422 aa9.39□□□□□ -0.91
CDH3-203ENST00000542274 PTPRZ1P23471 2315 aaPredicted RBP9.38□□□□□ -0.91
CDH3-203ENST00000542274 PCSK5Q92824 1860 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 TRBV5-5A0A0J9YX44 114 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 LIPT2A6NK58 231 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 FABP5P3A8MUU1 101 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 M0QYG6 137 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 MLNRO43193 412 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 IL2RAP01589 272 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 COX6A1P12074 109 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 CDAP32320 146 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 LINC00310P59036 64 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 ST8SIA1Q92185 356 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 NEUROG1Q92886 237 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 GP6Q9HCN6 339 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 RCL1Q9Y2P8 373 aaKnown RBP9.38□□□□□ -0.91
CDH3-203ENST00000542274 EMC9Q9Y3B6 208 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 PRRC2CQ9Y520 2896 aaKnown RBP9.38□□□□□ -0.91
CDH3-203ENST00000542274 IGHV1-45A0A0A0MS14 117 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 DKK1O94907 266 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 CD1AP06126 327 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 CCL3P10147 92 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 FOLR3P41439 243 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 SEC61GP60059 68 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 LCN2P80188 198 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 TRIP6Q15654 476 aaKnown RBP9.38□□□□□ -0.91
CDH3-203ENST00000542274 DMRTC1Q5HYR2 192 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 SLC25A42Q86VD7 318 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 CLEC1AQ8NC01 280 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 AP1S3Q96PC3 154 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 JMJD8Q96S16 334 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 TP73-AS1Q9UF72 201 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 TP53TG3Q9ULZ0 132 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 VSIG4Q9Y279 399 aa9.38□□□□□ -0.91
CDH3-203ENST00000542274 CHCHD2Q9Y6H1 151 aaPredicted RBP9.38□□□□□ -0.91
CDH3-203ENST00000542274 MED13Q9UHV7 2174 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 IGHV3-15A0A0B4J1V0 119 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 C21orf140B9A014 251 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 SERF1AO75920 110 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 UQCRFS1P47985 274 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 YPEL3P61236 119 aaPredicted RBP9.37□□□□□ -0.91
CDH3-203ENST00000542274 RELBQ01201 579 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 OR2M3Q8NG83 312 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 OR2K2Q8NGT1 345 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 MAP1LC3CQ9BXW4 147 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 FAM186AA6NE01 2351 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 TMEM213A2RRL7 107 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 HMGB3O15347 200 aaKnown RBP9.37□□□□□ -0.91
CDH3-203ENST00000542274 FCGR2CP31995 323 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 ZNF133P52736 654 aaPredicted RBP9.37□□□□□ -0.91
CDH3-203ENST00000542274 RPL8P62917 257 aaKnown RBP9.37□□□□□ -0.91
CDH3-203ENST00000542274 MRPS34P82930 218 aaKnown RBP9.37□□□□□ -0.91
CDH3-203ENST00000542274 C12orf54Q6X4T0 127 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 ASCL5Q7RTU5 278 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 RNF138Q8WVD3 245 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 PP6455Q8WZ26 134 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 DDIT4LQ96D03 193 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 GRAMD2BQ96HH9 432 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 SH3BGRL3Q9H299 93 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 SDF2L1Q9HCN8 221 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 TRAPPC1Q9Y5R8 145 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 TMEM14AQ9Y6G1 99 aa9.37□□□□□ -0.91
CDH3-203ENST00000542274 TRBV5-7A0A0A0MS05 114 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms