RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 DBX1A6NMT0 343 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 M0R1X1 148 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 OR2A4O95047 310 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 IGKV1-16P04430 117 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 CXCL3P19876 107 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 F2RP25116 425 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 CD1BP29016 333 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 F2RL1P55085 397 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 SRPXP78539 464 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 CD83Q01151 205 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 ANKRD55Q3KP44 614 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 CCDC144NLQ6NUI1 221 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 ZNF66Q6ZN08 573 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 LGI3Q8N145 548 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 TCTEX1D1Q8N7M0 179 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 LRTM2Q8N967 370 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 GLYATL2Q8WU03 294 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 OR2A7Q96R45 310 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 MDFIQ99750 246 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 RAB18Q9NP72 206 aa10.35□□□□□ -0.75
CCDC42-202ENST00000539522 SH2D7A6NKC9 451 aaPredicted RBP10.34□□□□□ -0.75
CCDC42-202ENST00000539522 H0Y980 276 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 HNRNPCP07910 306 aaKnown RBP eCLIP10.34□□□□□ -0.75
CCDC42-202ENST00000539522 OR5AC1P0C628 307 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 BLCAPP62952 87 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 HNF4GQ14541 408 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 SP6Q3SY56 376 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 LIAT1Q6ZQX7 453 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 Q6ZSV7 163 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 TCTE3Q8IZS6 198 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 TMEM56Q96MV1 263 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 RBM14Q96PK6 669 aaKnown RBP10.34□□□□□ -0.75
CCDC42-202ENST00000539522 JMJD8Q96S16 334 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 HSD17B10Q99714 261 aaKnown RBP10.34□□□□□ -0.75
CCDC42-202ENST00000539522 TMEM222Q9H0R3 208 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 RANGRFQ9HD47 186 aaPredicted RBP10.34□□□□□ -0.75
CCDC42-202ENST00000539522 TMEM56-RWDD3S4R434 201 aa10.34□□□□□ -0.75
CCDC42-202ENST00000539522 GOSR2O14653 212 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 TNFSF12O43508 249 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 OR2F2O95006 317 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 CDS2O95674 445 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 IFNA21P01568 189 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 GIPP09681 153 aaPredicted RBP10.33□□□□□ -0.76
CCDC42-202ENST00000539522 UCP1P25874 307 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 BRS3P32247 399 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 ARHGDIBP52566 201 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 RAP2BP61225 183 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 SRSF4Q08170 494 aaKnown RBP10.33□□□□□ -0.76
CCDC42-202ENST00000539522 CATR1Q13166 79 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 MRGPRG-AS1Q2M3A8 158 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 C2orf68Q2NKX9 166 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 GSG1LQ6UXU4 331 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 Q8N9W7 124 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 IL22RA2Q969J5 263 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 TP53RKQ96S44 253 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 ZNF702PQ9H963 129 aa10.33□□□□□ -0.76
CCDC42-202ENST00000539522 FAM212BQ9NTI7 297 aaPredicted RBP10.33□□□□□ -0.76
CCDC42-202ENST00000539522 SRRM4A7MD48 611 aaKnown RBP10.32□□□□□ -0.76
CCDC42-202ENST00000539522 TRIM77I1YAP6 450 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 IGLV2-23P01705 113 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 SERPINE2P07093 398 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 CYCSP99999 105 aaKnown RBP10.32□□□□□ -0.76
CCDC42-202ENST00000539522 CD300CQ08708 224 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 ZNF695Q8IW36 515 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 FAM71E2Q8N5Q1 922 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 C5orf56Q8N8D9 126 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 OR5M8Q8NGP6 311 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 CD300LFQ8TDQ1 290 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 ADTRPQ96IZ2 230 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 FYTTD1Q96QD9 318 aaKnown RBP10.32□□□□□ -0.76
CCDC42-202ENST00000539522 SLC25A33Q9BSK2 321 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 LIN7CQ9NUP9 197 aaKnown RBP10.32□□□□□ -0.76
CCDC42-202ENST00000539522 SIGLEC9Q9Y336 463 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 COL6A5A8TX70 2615 aa10.32□□□□□ -0.76
CCDC42-202ENST00000539522 C13orf42A0A1B0GVH6 325 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 DUXBA0A1W2PPF3 345 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 C5orf51A6NDU8 294 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 LINC01548A6NM66 108 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 RAMP3O60896 148 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 SIX6O95475 246 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 MOSP00540 346 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 FAM106CPP0CH98 169 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 HKR1P10072 659 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 RPA2P15927 270 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 TMEM11P17152 192 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 THBS3P49746 956 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 H2BFSP57053 126 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 SSBP2P81877 361 aaPredicted RBP10.31□□□□□ -0.76
CCDC42-202ENST00000539522 SELENOHQ8IZQ5 122 aaKnown RBP10.31□□□□□ -0.76
CCDC42-202ENST00000539522 Q8N2B8 174 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 OR2T10Q8NGZ9 312 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 OR51H1Q8NH63 302 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 C19orf24Q9BVV8 132 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 RANBP3Q9H6Z4 567 aaPredicted RBP10.31□□□□□ -0.76
CCDC42-202ENST00000539522 PRR13Q9NZ81 148 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 TMED3Q9Y3Q3 217 aa10.31□□□□□ -0.76
CCDC42-202ENST00000539522 TMEM89A2RUT3 159 aa10.3□□□□□ -0.76
CCDC42-202ENST00000539522 FAM25EA8MYX2 175 aa10.3□□□□□ -0.76
CCDC42-202ENST00000539522 TSPAN9O75954 239 aa10.3□□□□□ -0.76
CCDC42-202ENST00000539522 ATG12O94817 140 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms