RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 KIAA1549Q9HCM3 1950 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 A8MXE2 369 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 SS18L1O75177 396 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-237ENST00000539504 SERF1AO75920 110 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 IRF2P14316 349 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 UBE2NP61088 152 aaKnown RBP9.41□□□□□ -0.9
SYNE1-237ENST00000539504 HTD2P86397 168 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 TRA2AQ13595 282 aaKnown RBP eCLIP9.41□□□□□ -0.9
SYNE1-237ENST00000539504 WDR83OSQ9Y284 106 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 NCKAP5O14513 1909 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 OOEPA6NGQ2 149 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 TMEM210A6NLX4 147 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 C15orf62A8K5M9 175 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 AQP7O14520 342 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 RAB4AP20338 218 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 OR1C1Q15619 314 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 C6orf15Q6UXA7 325 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-237ENST00000539504 TMEM144Q7Z5S9 345 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 OR5AU1Q8NGC0 362 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 OR1L6Q8NGR2 347 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 TTTY12Q9BZ98 90 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 MRPS18CQ9Y3D5 142 aaKnown RBP9.41□□□□□ -0.9
SYNE1-237ENST00000539504 KIR2DL5BA0A0G2JN68 375 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 KIR2DL5BA0A0G2JPC4 375 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 LINC00473A8K010 186 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 SSPNQ14714 243 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 TMEM183BQ1AE95 376 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 VKORC1L1Q8N0U8 176 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 KIR2DL5AQ8N109 375 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 SLC25A40Q8TBP6 338 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 HINT2Q9BX68 163 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 ABI3Q9P2A4 366 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 GNG12Q9UBI6 72 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 CELSR3Q9NYQ7 3312 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 FRYLO94915 3013 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 TRBV20OR9-2A0A075B6H5 130 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 M0QZK8 103 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 TMPRSS2O15393 492 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 Q6ZWC4 215 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 TMEM251Q8N6I4 163 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 TMEM208Q9BTX3 173 aa9.4□□□□□ -0.9
SYNE1-237ENST00000539504 SNURFLB1AK76 121 aa9.4□□□□□ -0.91
SYNE1-237ENST00000539504 OR9G9P0C7N8 305 aa9.4□□□□□ -0.91
SYNE1-237ENST00000539504 GPR12P47775 334 aa9.4□□□□□ -0.91
SYNE1-237ENST00000539504 RPP30P78346 268 aaKnown RBP9.4□□□□□ -0.91
SYNE1-237ENST00000539504 ZNF146Q15072 292 aa9.4□□□□□ -0.91
SYNE1-237ENST00000539504 SIGLECL1Q8N7X8 197 aa9.4□□□□□ -0.91
SYNE1-237ENST00000539504 DCTN5Q9BTE1 182 aa9.4□□□□□ -0.91
SYNE1-237ENST00000539504 DEFB127Q9H1M4 99 aa9.4□□□□□ -0.91
SYNE1-237ENST00000539504 PILRBQ9UKJ0 227 aa9.4□□□□□ -0.91
SYNE1-237ENST00000539504 TIMP3P35625 211 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 CDKN1AP38936 164 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 BRWD1-AS2P59051 145 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 RPL31P62899 125 aaKnown RBP9.39□□□□□ -0.91
SYNE1-237ENST00000539504 PAFAH1B2P68402 229 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 TIPARPQ7Z3E1 657 aaKnown RBP9.39□□□□□ -0.91
SYNE1-237ENST00000539504 ABHD12Q8N2K0 398 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 UHRF2Q96PU4 802 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 CXorf1O96002 111 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 TNFSF10P50591 281 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 ERVK11-1P61568 191 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 ERVK-16P61578 105 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 RANP62826 216 aaKnown RBP9.39□□□□□ -0.91
SYNE1-237ENST00000539504 MS4A5Q9H3V2 200 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 FZR1Q9UM11 496 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 NTN3O00634 580 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-237ENST00000539504 RRHO14718 337 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 ACTL6BO94805 426 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 SLC35B1P78383 322 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 OR5I1Q13606 314 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 C21orf62-AS1Q17RA5 79 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 HLA-DRB5Q30154 266 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 MIEN1Q9BRT3 115 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 VPS13AQ96RL7 3174 aa9.39□□□□□ -0.91
SYNE1-237ENST00000539504 M0R1X1 148 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 SPINT2O43291 252 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 NPSP0C0P6 89 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 P0C879 139 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 PMS2CLQ68D20 193 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 MAFAQ8NHW3 353 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-237ENST00000539504 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-237ENST00000539504 DLEU1O43261 78 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 ARG2P78540 354 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 KIAA1644Q3SXP7 199 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 DCAF10Q5QP82 559 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 FBXW9Q5XUX1 488 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 TREML4Q6UXN2 200 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 OR8I2Q8N0Y5 310 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 OR13A1Q8NGR1 328 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 BCL2L2Q92843 193 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-237ENST00000539504 HSD17B10Q99714 261 aaKnown RBP9.38□□□□□ -0.91
SYNE1-237ENST00000539504 GCM1Q9NP62 436 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 NAT8BQ9UHF3 227 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 F2Z2F3 143 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 SMPD2O60906 423 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 TNFSF13O75888 250 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 LYZL6O75951 148 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 PMCHP20382 165 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 TCL1AP56279 114 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 LPAL2Q16609 132 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms