RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 OR6C3Q9NZP0 311 aa5.3□□□□□ -1.56
SYNE1-233ENST00000535896 GAB2Q9UQC2 676 aa5.3□□□□□ -1.56
SYNE1-233ENST00000535896 WDR83OSQ9Y284 106 aa5.3□□□□□ -1.56
SYNE1-233ENST00000535896 CNTRLQ7Z7A1 2325 aa5.3□□□□□ -1.56
SYNE1-233ENST00000535896 CHD6Q8TD26 2715 aa5.3□□□□□ -1.56
SYNE1-233ENST00000535896 KMT2BQ9UMN6 2715 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-233ENST00000535896 A0A096LPE4 126 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 TRBV23-1A0A0A0MS06 115 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 TRGV8A0A0C4DH27 118 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 TMEM238LA0A1B0GVL6 79 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 A0A1W2PPZ6 126 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 A0A1W2PR80 420 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 ODAMA1E959 279 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 XKRY2A2RUG3 117 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 PINLYPA6NC86 204 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 KLRC4-KLRK1H3BQV0 150 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 ITGB1BP1O14713 200 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 NKX2-8O15522 239 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SMPD2O60906 423 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 IL18BPO95998 194 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 HAND1O96004 215 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 NGFP01138 241 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 IGKV1D-33P01593 117 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 IGKV1-33P01594 117 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 GYPAP02724 150 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 WT1P19544 449 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 CD1BP29016 333 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 OPRK1P41145 380 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 KIR2DS2P43631 304 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 IDH3GP51553 393 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 CNN1P51911 297 aaKnown RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 FGF8P55075 233 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 ELLP55199 621 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 UBE2NP61088 152 aaKnown RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 RPL19P84098 196 aaKnown RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 COL10A1Q03692 680 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SRSF6Q13247 344 aaKnown RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SLC10A1Q14973 349 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 Q3ZCU0 254 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 COX19Q49B96 90 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 FFAR4Q5NUL3 377 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 GFI1BQ5VTD9 330 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 ACSM6Q6P461 480 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 FAM90A1Q86YD7 464 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SCCPDHQ8NBX0 429 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 C1orf162Q8NEQ5 155 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 OR4F5Q8NH21 305 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 OR4F4Q96R69 305 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 CRIM1Q9NZV1 1036 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 PPP1R3CQ9UQK1 317 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 IGSF10Q6WRI0 2623 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 LOC400499M0QZD8 3231 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 ATRXP46100 2492 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 ZNF407Q9C0G0 2248 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 TRBV9A0A0B4J1U6 114 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 KIR2DL5BA0A0G2JN68 375 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 KIR2DL5BA0A0G2JPC4 375 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 A0A1B0GWJ7 208 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 ZNF503-AS2A6NEH8 195 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 C9JCJ5 164 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 C11orf94C9JXX5 98 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SIRPB1O00241 398 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 RHBDL1O75783 438 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 NXPH3O95157 252 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 MT-CO2P00403 227 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 ESDP10768 282 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 CA6P23280 308 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 ATP5IP56385 69 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SOX8P57073 446 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SPCS3P61009 180 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 YPEL3P61236 119 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SMIM21Q3B7S5 101 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 TMEM30BQ3MIR4 351 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 DCAF10Q5QP82 559 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 OR8G2PQ6IF36 304 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 BTNL3Q6UXE8 466 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 H2BFWTQ7Z2G1 175 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 LINC01551Q86U37 167 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 KIR2DL5AQ8N109 375 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 GBGT1Q8N5D6 347 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 TMEM251Q8N6I4 163 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 RPUSD4Q96CM3 377 aaKnown RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 THOC3Q96J01 351 aaKnown RBP5.29□□□□□ -1.56
SYNE1-233ENST00000535896 GPHA2Q96T91 129 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SFXN3Q9BWM7 321 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 OR2D2Q9H210 308 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 NCOR1P1Q9H4R4 102 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 PRORYQ9H606 182 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 SLC25A22Q9H936 323 aa5.29□□□□□ -1.56
SYNE1-233ENST00000535896 MED13Q9UHV7 2174 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 USF3Q68DE3 2245 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 MDFIC2A0A1B0GVS7 189 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 A0A1W2PPQ1 181 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 MARCH11A6NNE9 402 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 C12orf77C9JDV5 145 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 M0QZK8 103 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 CDIPTO14735 213 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 SPINT2O43291 252 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 EIF4EBP3O60516 100 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-233ENST00000535896 CXorf1O96002 111 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms