RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	DDB2	Q92466	427 aa		11.85	□□□□□ -0.51
CPSF1-208	ENST00000532560	TSNAX	Q99598	290 aa	Known RBP	11.85	□□□□□ -0.51
CPSF1-208	ENST00000532560	OR51J1	Q9H342	316 aa		11.85	□□□□□ -0.51
CPSF1-208	ENST00000532560	WNK1	Q9H4A3	2382 aa		11.85	□□□□□ -0.51
CPSF1-208	ENST00000532560	MGAM2	Q2M2H8	2515 aa		11.85	□□□□□ -0.51
CPSF1-208	ENST00000532560	IGLV2-14	P01704	120 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	FCER2	P06734	321 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	RRAS	P10301	218 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	FCGR2C	P31995	323 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	TAS2R46	P59540	309 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	RPS16	P62249	146 aa	Known RBP	11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	MSMO1	Q15800	293 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	NSUN5P1	Q3KNT7	163 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	LIN54	Q6MZP7	749 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	ZNF329	Q86UD4	541 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	FLYWCH2	Q96CP2	140 aa	Known RBP	11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	FBXL15	Q9H469	300 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	NUDT15	Q9NV35	164 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	LINC00527	Q9UJ94	153 aa		11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	MRPS7	Q9Y2R9	242 aa	Known RBP	11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	TSSC4	Q9Y5U2	329 aa	Predicted RBP	11.84	□□□□□ -0.51
CPSF1-208	ENST00000532560	IGHV7-81	A0A0B4J1V7	117 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	TCRBV4S1A1T	A0A5B7	111 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	LINC00473	A8K010	186 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	SULT1C2	O00338	296 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	PPY	P01298	95 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	AADAC	P22760	399 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	CFHR3	Q02985	330 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	PLGLA	Q15195	96 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	PSG5	Q15238	335 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	OVCH2	Q7RTZ1	564 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	GIMAP1	Q8WWP7	306 aa		11.83	□□□□□ -0.52
CPSF1-208	ENST00000532560	VWF	P04275	2813 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	PKD1L1	Q8TDX9	2849 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	ANKRD20A5P	A0PJZ0	165 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	IGLV2-23	P01705	113 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	C4BPB	P20851	252 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	VDAC1	P21796	283 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	RCVRN	P35243	200 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	LGALS7	P47929	136 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	MECP2	P51608	486 aa	Known RBP	11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	NDP	Q00604	133 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	EIF4EBP1	Q13541	118 aa	Predicted RBP	11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	TMEM177	Q53S58	311 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	ZNF660	Q6AZW8	331 aa	Predicted RBP	11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	KCTD9	Q7L273	389 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	BVES	Q8NE79	360 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	OR4F17	Q8NGA8	305 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	OR5H2	Q8NGV7	314 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	FAM110D	Q8TAY7	271 aa	Predicted RBP	11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	HARBI1	Q96MB7	349 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	OR4F4	Q96R69	305 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	HSD17B10	Q99714	261 aa	Known RBP	11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	EHF	Q9NZC4	300 aa		11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	METTL1	Q9UBP6	276 aa	Known RBP	11.82	□□□□□ -0.52
CPSF1-208	ENST00000532560	ATP6V0E1	O15342	81 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	SLC25A17	O43808	307 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	IL5	P05113	134 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	SULT1A3	P0DMM9	295 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	SULT1A4	P0DMN0	295 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	CRIP2	P52943	208 aa	Predicted RBP	11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	KHDC1L	Q5JSQ8	128 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	TEX38	Q6PEX7	206 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	ZNF66	Q6ZN08	573 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	RNF152	Q8N8N0	203 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	SECTM1	Q8WVN6	248 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	ASB13	Q8WXK3	278 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	C20orf85	Q9H1P6	137 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	GPN1	Q9HCN4	374 aa	Predicted RBP	11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	HRASLS	Q9HDD0	168 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	PARP11	Q9NR21	331 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	PRELID3B	Q9Y3B1	194 aa		11.81	□□□□□ -0.52
CPSF1-208	ENST00000532560	TRAV6	A0A075B6T7	132 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560		A0A1W2PRX2	142 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	SNRPGP15	A8MWD9	76 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	SHOX	O15266	292 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	CRYZL1	O95825	349 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	IGHG4	P01861	327 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	HRH1	P35367	487 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	HERV-K104	P61576	105 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	RPL23A	P62750	156 aa	Known RBP	11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	CX3CL1	P78423	397 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	FOXE3	Q13461	319 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	FCN2	Q15485	313 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	DHRS11	Q6UWP2	260 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	ZBTB34	Q8NCN2	500 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	OR52I2	Q8NH67	350 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	OSR1	Q8TAX0	266 aa	Predicted RBP	11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	MOB3A	Q96BX8	217 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	R3HDM4	Q96D70	268 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	SLC5A7	Q9GZV3	580 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	TPSG1	Q9NRR2	321 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	ZFP57	Q9NU63	452 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	SCP2D1	Q9UJQ7	156 aa		11.8	□□□□□ -0.52
CPSF1-208	ENST00000532560	FCN1	O00602	326 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	CA2	P00918	260 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	PMP2	P02689	132 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	CRYGB	P07316	175 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	ELANE	P08246	267 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	PPIF	P30405	207 aa	Known RBP	11.79	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms