RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LCN12Q6JVE5 192 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 SFXN4Q6P4A7 337 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 GTSCR1Q86UQ5 136 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 Q8N402 240 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 LGALS14Q8TCE9 139 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 ADTRPQ96IZ2 230 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 CENPOQ9BU64 300 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 OR51E2Q9H255 320 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 COA4Q9NYJ1 87 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 TNCP24821 2201 aa8.63□□□□□ -1.03
VPS28-214ENST00000531032 OR9G9P0C7N8 305 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 APELAP0DMC3 54 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 CD36P16671 472 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 SDC2P34741 201 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 MECP2P51608 486 aaKnown RBP8.62□□□□□ -1.03
VPS28-214ENST00000531032 GNG2P59768 71 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 TNXAQ16473 311 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 TATDN3Q17R31 274 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 TIMM50Q3ZCQ8 353 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 Q6ZS49 121 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 NR2C2APQ86WQ0 139 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 H1FOOQ8IZA3 346 aaPredicted RBP8.62□□□□□ -1.03
VPS28-214ENST00000531032 SRSF12Q8WXF0 261 aaKnown RBP8.62□□□□□ -1.03
VPS28-214ENST00000531032 SNAPC3Q92966 411 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 PHB2Q99623 299 aa8.62□□□□□ -1.03
VPS28-214ENST00000531032 ZNF230Q9UIE0 474 aaPredicted RBP8.62□□□□□ -1.03
VPS28-214ENST00000531032 TRBV9A0A0B4J1U6 114 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 IZUMO1RA6ND01 250 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 FAM223BA6NKX1 122 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 LINC00473A8K010 186 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 BMPR1BO00238 502 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 AIREO43918 545 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 CRYZL1O95825 349 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 DTYMKP23919 212 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 RHOGP84095 191 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 IDO2Q6ZQW0 420 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 FAM223AQ8IWN6 122 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 OR2K2Q8NGT1 345 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 OSR1Q8TAX0 266 aaPredicted RBP8.61□□□□□ -1.03
VPS28-214ENST00000531032 TUBA4BQ9H853 241 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 AKIP1Q9NQ31 210 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 RHBDL2Q9NX52 303 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 PEMTQ9UBM1 199 aa8.61□□□□□ -1.03
VPS28-214ENST00000531032 IGKV1D-8A0A087WSZ0 117 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 TMEM235A6NFC5 223 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 CREBL2O60519 120 aaPredicted RBP8.6□□□□□ -1.03
VPS28-214ENST00000531032 TNFAIP8O95379 198 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 IFNA6P05013 189 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 SAA1P0DJI8 122 aaPredicted RBP8.6□□□□□ -1.03
VPS28-214ENST00000531032 ZNF45Q02386 682 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 EXOSC2Q13868 293 aaKnown RBP8.6□□□□□ -1.03
VPS28-214ENST00000531032 CDK10Q15131 360 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 CDNFQ49AH0 187 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 IDNKQ5T6J7 187 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 ADAMTSL5Q6ZMM2 481 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 LINC00322Q6ZN03 302 aaPredicted RBP8.6□□□□□ -1.03
VPS28-214ENST00000531032 LAX1Q8IWV1 398 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 NUDCD2Q8WVJ2 157 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 ACOT12Q8WYK0 555 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 ST6GALNAC5Q9BVH7 336 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 ZNF430Q9H8G1 570 aaPredicted RBP8.6□□□□□ -1.03
VPS28-214ENST00000531032 ETV7Q9Y603 341 aa8.6□□□□□ -1.03
VPS28-214ENST00000531032 A0A087WXM4 84 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.59□□□□□ -1.03
VPS28-214ENST00000531032 MPPED1O15442 326 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 PRH1P02810 166 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 CLEC2LP0C7M8 214 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 ATP5G2Q06055 141 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 CD300EQ496F6 205 aaPredicted RBP8.59□□□□□ -1.03
VPS28-214ENST00000531032 FAM209BQ5JX69 171 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 HACD4Q5VWC8 232 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 TTC9CQ8N5M4 171 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 ZNF645Q8N7E2 425 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 NECAP1Q8NC96 275 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 SPIN2AQ99865 258 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 SPIN2BQ9BPZ2 258 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 RNF167Q9H6Y7 350 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 CEPT1Q9Y6K0 416 aa8.59□□□□□ -1.03
VPS28-214ENST00000531032 EPPK1P58107 5090 aaKnown RBP8.58□□□□□ -1.04
VPS28-214ENST00000531032 J3QRK9 145 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 TUSC2O75896 110 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 ACTL6BO94805 426 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 IGLV2-14P01704 120 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 CTXN2P0C2S0 81 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 SCAND1P57086 179 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 ARPC4P59998 168 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 CD81P60033 236 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 C10orf55Q5SWW7 151 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 KCTD9Q7L273 389 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 MMD2Q8IY49 270 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 TSPAN14Q8NG11 270 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 KCTD12Q96CX2 325 aaKnown RBP8.58□□□□□ -1.04
VPS28-214ENST00000531032 DCSTAMPQ9H295 470 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 HIPK2Q9H2X6 1198 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 PLEKHA3Q9HB20 300 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 RETNQ9HD89 108 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 ELF5Q9UKW6 265 aaPredicted RBP8.58□□□□□ -1.04
VPS28-214ENST00000531032 OR2W1Q9Y3N9 320 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 DMRT1Q9Y5R6 373 aa8.58□□□□□ -1.04
VPS28-214ENST00000531032 DNAH1Q9P2D7 4330 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms