RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.21■□□□□ 0.35
VPS28-212ENST00000530836 SLC35D1Q9NTN3 355 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 ZNRD1Q9P1U0 126 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 MED13LQ71F56 2210 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 RNF222A6NCQ9 220 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 WRBO00258 174 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 IGHV4-31P0DP07 118 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 MC5RP33032 325 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 P2RY1P47900 373 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 Q6ZRM9 215 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 MRPL20Q9BYC9 149 aaKnown RBP17.21■□□□□ 0.35
VPS28-212ENST00000530836 CSPG4Q6UVK1 2322 aa17.2■□□□□ 0.34
VPS28-212ENST00000530836 RAB13P51153 203 aa17.2■□□□□ 0.34
VPS28-212ENST00000530836 AP2S1P53680 142 aaPredicted RBP17.2■□□□□ 0.34
VPS28-212ENST00000530836 CXorf66Q5JRM2 361 aaPredicted RBP17.2■□□□□ 0.34
VPS28-212ENST00000530836 PNKDQ8N490 385 aa17.2■□□□□ 0.34
VPS28-212ENST00000530836 DMBX1Q8NFW5 382 aa17.2■□□□□ 0.34
VPS28-212ENST00000530836 SMR3AQ99954 134 aa17.2■□□□□ 0.34
VPS28-212ENST00000530836 RCL1Q9Y2P8 373 aaKnown RBP17.2■□□□□ 0.34
VPS28-212ENST00000530836 RGS13O14921 159 aa17.19■□□□□ 0.34
VPS28-212ENST00000530836 CRYZL1O95825 349 aa17.19■□□□□ 0.34
VPS28-212ENST00000530836 GAPDHP04406 335 aaKnown RBP17.19■□□□□ 0.34
VPS28-212ENST00000530836 KRTAP1-1Q07627 177 aa17.19■□□□□ 0.34
VPS28-212ENST00000530836 POU2AF1Q16633 256 aa17.19■□□□□ 0.34
VPS28-212ENST00000530836 GPR157Q5UAW9 335 aa17.19■□□□□ 0.34
VPS28-212ENST00000530836 CYB5R2Q6BCY4 276 aa17.19■□□□□ 0.34
VPS28-212ENST00000530836 PDPNQ86YL7 162 aa17.19■□□□□ 0.34
VPS28-212ENST00000530836 OSR1Q8TAX0 266 aaPredicted RBP17.19■□□□□ 0.34
VPS28-212ENST00000530836 NABP2Q9BQ15 211 aa17.19■□□□□ 0.34
VPS28-212ENST00000530836 KANTRA0A1W2PQU2 76 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 FAM157AC9JC47 383 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 H0YJW9 148 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 TSC22D2O75157 780 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 MED6O75586 246 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 COX7A1P24310 79 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 CEACAM3P40198 252 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 VAMP2P63027 116 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 IFITM2Q01629 132 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 MIDNQ504T8 468 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 OR4P4Q8NGL7 312 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 RAB40CQ96S21 281 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 CR1P17927 2039 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 HTR1DP28221 377 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 RPL12P30050 165 aaKnown RBP17.18■□□□□ 0.34
VPS28-212ENST00000530836 POLR2GP62487 172 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS28-212ENST00000530836 LINC01356Q8N9X3 169 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 SIRPDQ9H106 197 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 SIRT7Q9NRC8 400 aa17.18■□□□□ 0.34
VPS28-212ENST00000530836 LEUTXA8MZ59 168 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 B4DSR2 109 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 GPR137BO60478 399 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 LY6G6DO95868 133 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 DVL1P1P54792 670 aaPredicted RBP17.17■□□□□ 0.34
VPS28-212ENST00000530836 IZUMO4Q1ZYL8 232 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 AARDQ4LEZ3 155 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 VMO1Q7Z5L0 202 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 OR4C13Q8NGP0 309 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 LHX4Q969G2 390 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 RPEQ96AT9 228 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 RHOVQ96L33 236 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 GSX1Q9H4S2 264 aaPredicted RBP17.17■□□□□ 0.34
VPS28-212ENST00000530836 C11orf1Q9H5F2 150 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 HSPB7Q9UBY9 170 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 WASHC3Q9Y3C0 194 aa17.17■□□□□ 0.34
VPS28-212ENST00000530836 H7C2Y5 167 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 TAAR5O14804 337 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 BCL2L11O43521 198 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 SYNGR2O43760 224 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 CD5LO43866 347 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 SSSCA1O60232 199 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 LY86O95711 162 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 ARG1P05089 322 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 HKR1P10072 659 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 TMEM177Q53S58 311 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 CLEC9AQ6UXN8 241 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 SLC51BQ86UW2 128 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 FLYWCH2Q96CP2 140 aaKnown RBP17.16■□□□□ 0.34
VPS28-212ENST00000530836 ARPC5LQ9BPX5 153 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 ZC4H2Q9NQZ6 224 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 DPM3Q9P2X0 92 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 INSIG2Q9Y5U4 225 aa17.16■□□□□ 0.34
VPS28-212ENST00000530836 ABCA1O95477 2261 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 ODF3BA8MYP8 253 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 LY6LH3BQJ8 138 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 CHST1O43916 411 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 TOX4O94842 621 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 REG1BP48304 166 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 TAS2R30P59541 319 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 TNFRSF9Q07011 255 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 ZNF767PQ75MW2 155 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 OR4A16Q8NH70 328 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 SLC25A31Q9H0C2 315 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 MMP26Q9NRE1 261 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 TMEM140Q9NV12 185 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 WSB1Q9Y6I7 421 aa17.15■□□□□ 0.34
VPS28-212ENST00000530836 RBMXL2O75526 392 aaKnown RBP17.14■□□□□ 0.33
VPS28-212ENST00000530836 TGFAP01135 160 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 IGKV1-16P04430 117 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 RPL23AP62750 156 aaKnown RBP17.14■□□□□ 0.33
VPS28-212ENST00000530836 MINOS1Q5TGZ0 78 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms