RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 TRAF3IP2O43734 574 aaPredicted RBP2.37□□□□□ -2.03
CD44-229ENST00000528672 TNFSF13O75888 250 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 OR2H2O95918 312 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 LGALS1P09382 135 aaKnown RBP2.37□□□□□ -2.03
CD44-229ENST00000528672 SCTP09683 121 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 GZMBP10144 247 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 ZNF14P17017 642 aaPredicted RBP2.37□□□□□ -2.03
CD44-229ENST00000528672 CXCL2P19875 107 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 CXCL3P19876 107 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 NTF3P20783 257 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 TSPOP30536 169 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 ARL2P36404 184 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 RBMXP38159 391 aaKnown RBP2.37□□□□□ -2.03
CD44-229ENST00000528672 TAF6P49848 677 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 FABP6P51161 128 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 RND2P52198 227 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 FOXA1P55317 472 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 NDUFA6P56556 154 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 LCN6P62502 163 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 SLC35A2P78381 396 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 DEFA5Q01523 94 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 RPL18AQ02543 176 aaKnown RBP2.37□□□□□ -2.03
CD44-229ENST00000528672 COA6Q5JTJ3 125 aaKnown RBP2.37□□□□□ -2.03
CD44-229ENST00000528672 BCL2L15Q5TBC7 163 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 H2AFVQ71UI9 128 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 EXOC3-AS1Q8N2X6 119 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 KRTCAP2Q8N6L1 136 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.37□□□□□ -2.03
CD44-229ENST00000528672 OR2T27Q8NH04 317 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 NEIL3Q8TAT5 605 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 TMEM230Q96A57 120 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 FAM3DQ96BQ1 224 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 PLEKHB2Q96CS7 222 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 PHYHIPLQ96FC7 376 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 C16orf74Q96GX8 76 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 LYSMD1Q96S90 227 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 PBDC1Q9BVG4 233 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 ULBP3Q9BZM4 244 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 COA1Q9GZY4 146 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 TUBA4BQ9H853 241 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 SMCO4Q9NRQ5 59 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 FBXL12Q9NXK8 326 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 OR5AC2Q9NZP5 309 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 ZNF629Q9UEG4 869 aaPredicted RBP2.37□□□□□ -2.03
CD44-229ENST00000528672 BCL9LQ86UU0 1499 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 ZFYVE16Q7Z3T8 1539 aa2.37□□□□□ -2.03
CD44-229ENST00000528672 ABCA7Q8IZY2 2146 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 A0A087WXM4 84 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 A0A0G2JMM0 328 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 A0A1W2PPB8 328 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 NCBP2LA6PVI3 153 aaKnown RBP2.36□□□□□ -2.03
CD44-229ENST00000528672 KIR3DP1A8MWS1 328 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 H0YJW9 148 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 H7BYZ3 331 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 OR2T1O43869 369 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 IGKV1D-16P01601 117 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 HLA-DQB2P05538 268 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 IGKV5-2P06315 115 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 CTSDP07339 412 aaPredicted RBP2.36□□□□□ -2.03
CD44-229ENST00000528672 OR4A8P0C604 315 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 OR5AC1P0C628 307 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 AKAIN1P0CW23 69 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 ZNF728P0DKX0 622 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 LINC00694P0DN24 101 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 IGHV3-43DP0DP04 118 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 ATF1P18846 271 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 KLK2P20151 261 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 RAB5AP20339 215 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 IMPA1P29218 277 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 CTBP2P56545 445 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 DEFA1P59665 94 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 DEFA3P59666 94 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 SNRPD2P62316 118 aaKnown RBP2.36□□□□□ -2.03
CD44-229ENST00000528672 EIF5AP63241 154 aaKnown RBP2.36□□□□□ -2.03
CD44-229ENST00000528672 IGLV3-21P80748 117 aaPredicted RBP2.36□□□□□ -2.03
CD44-229ENST00000528672 REG3AQ06141 175 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 TMEM267Q0VDI3 215 aaPredicted RBP2.36□□□□□ -2.03
CD44-229ENST00000528672 LAMTOR4Q0VGL1 99 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 ZNF684Q5T5D7 378 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 Q5XG85 94 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 OR2T5Q6IEZ7 315 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 RASL11AQ6T310 242 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 HRCT1Q6UXD1 115 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 TEX43Q6ZNM6 134 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 FOXI2Q6ZQN5 318 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 LINC00173Q6ZV60 143 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 Q6ZVH6 145 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 GTF2H5Q6ZYL4 71 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 ZNF550Q7Z398 422 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 MRPL55Q7Z7F7 128 aaKnown RBP2.36□□□□□ -2.03
CD44-229ENST00000528672 HIST3H2BBQ8N257 126 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 ZCCHC24Q8N2G6 241 aaKnown RBP2.36□□□□□ -2.03
CD44-229ENST00000528672 YIPF7Q8N8F6 280 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 ZFP41Q8N8Y5 198 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 BPIFB6Q8NFQ5 453 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 OR11G2Q8NGC1 345 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 OR2T29Q8NH02 315 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 OR10D3Q8NH80 312 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 MFSD8Q8NHS3 518 aa2.36□□□□□ -2.03
CD44-229ENST00000528672 JOSD2Q8TAC2 188 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms