RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RPEQ96AT9 228 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 RNF5Q99942 180 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 PRDM13Q9H4Q3 707 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 NAA60Q9H7X0 242 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 SHPKQ9UHJ6 478 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 SVEP1Q4LDE5 3571 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 IGHV1-3A0A0C4DH29 117 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 C7orf66A4D0T2 115 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 FAM90A9PA6NNJ1 464 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 LINC00473A8K010 186 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 VGLL3A8MV65 326 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 H0Y980 276 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 M0R1X1 148 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 TNFSF12O43508 249 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 ATG12O94817 140 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 SFT2D2O95562 160 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 HPRT1P00492 218 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 IGHV4-38-2P0DP08 117 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 VSIG10L2P0DP72 767 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 HLA-GP17693 338 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 ANXA7P20073 488 aaKnown RBP5.95□□□□□ -1.46
CD44-228ENST00000528455 HNF1AP20823 631 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 UCP1P25874 307 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 LGALS7P47929 136 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 DYNLT3P51808 116 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 BRWD1-AS2P59051 145 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 RPL30P62888 115 aaKnown RBP5.95□□□□□ -1.46
CD44-228ENST00000528455 SUPT4H1P63272 117 aaKnown RBP5.95□□□□□ -1.46
CD44-228ENST00000528455 PRB3Q04118 309 aaPredicted RBP5.95□□□□□ -1.46
CD44-228ENST00000528455 CD69Q07108 199 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 KLRD1Q13241 179 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 SSX2Q16385 188 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 C4orf46Q504U0 113 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 ZNF585BQ52M93 769 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 LDLRAD2Q5SZI1 272 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 DHRS7BQ6IAN0 325 aaPredicted RBP5.95□□□□□ -1.46
CD44-228ENST00000528455 LHFPL4Q7Z7J7 247 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 LYG2Q86SG7 212 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 LRTM2Q8N967 370 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 ZNF383Q8NA42 475 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 ZNF431Q8TF32 576 aaPredicted RBP5.95□□□□□ -1.46
CD44-228ENST00000528455 MITD1Q8WV92 249 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 CAPSLQ8WWF8 208 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 DDB2Q92466 427 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 CFHR4Q92496 578 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 IL22RA2Q969J5 263 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 RAX2Q96IS3 184 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 TMEM56Q96MV1 263 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 NABP2Q9BQ15 211 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 TMEM222Q9H0R3 208 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 PLEKHA2Q9HB19 425 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 ZNRD1Q9P1U0 126 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 FAM96BQ9Y3D0 163 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 HILPDAQ9Y5L2 63 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 TMEM56-RWDD3S4R434 201 aa5.95□□□□□ -1.46
CD44-228ENST00000528455 CUBNO60494 3623 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 TRAV40A0A0B4J280 105 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 H0YJW9 148 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 CREBL2O60519 120 aaPredicted RBP5.94□□□□□ -1.46
CD44-228ENST00000528455 HLA-AP01891 365 aaKnown RBP5.94□□□□□ -1.46
CD44-228ENST00000528455 SERPINE2P07093 398 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 FBP1P09467 338 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 FAM106CPP0CH98 169 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 SRD5A1P18405 259 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 LPAR6P43657 344 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 RAB13P51153 203 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 RAB25P57735 213 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 LINC00205P59089 165 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 SRPXP78539 464 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 SRSF2Q01130 221 aaKnown RBP5.94□□□□□ -1.46
CD44-228ENST00000528455 DHRS2Q13268 280 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 SCGB2A2Q13296 93 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 PPP1R1AQ13522 171 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 EBI3Q14213 229 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 DIAPH2-AS1Q14236 149 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 TMEM187Q14656 261 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 TATDN3Q17R31 274 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 RTL8BQ17RB0 113 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 SP6Q3SY56 376 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 TOR2AQ5JU69 321 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 FAM120AOSQ5T036 256 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 MOB3BQ86TA1 216 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 PDPNQ86YL7 162 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 PDZD9Q8IXQ8 264 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 SPAG16Q8N0X2 631 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 LGI3Q8N145 548 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 C12orf45Q8N5I9 185 aaPredicted RBP5.94□□□□□ -1.46
CD44-228ENST00000528455 DRAXINQ8NBI3 349 aaPredicted RBP5.94□□□□□ -1.46
CD44-228ENST00000528455 OR4C13Q8NGP0 309 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 SPATA3Q8NHX4 192 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 COQ8AQ8NI60 647 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 TCTEX1D2Q8WW35 142 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 FLYWCH2Q96CP2 140 aaKnown RBP5.94□□□□□ -1.46
CD44-228ENST00000528455 C5orf30Q96GV9 206 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 TP53RKQ96S44 253 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 PHB2Q99623 299 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 MS4A7Q9GZW8 240 aaPredicted RBP5.94□□□□□ -1.46
CD44-228ENST00000528455 LIN7CQ9NUP9 197 aaKnown RBP5.94□□□□□ -1.46
CD44-228ENST00000528455 WASHC3Q9Y3C0 194 aa5.94□□□□□ -1.46
CD44-228ENST00000528455 DNHD1Q96M86 4753 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms