RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PGAM2P15259 253 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 F2RP25116 425 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 BRWD1-AS2P59051 145 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 ZNF45Q02386 682 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 TMEM267Q0VDI3 215 aaPredicted RBP11.24□□□□□ -0.61
NUP54-216ENST00000514901 ZNF79Q15937 498 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 SCGB2B2Q4G0G5 96 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 OR2B11Q5JQS5 317 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 OR4C16Q8NGL9 310 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 OR51H1Q8NH63 302 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 VSTM2AQ8TAG5 236 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 GPHA2Q96T91 129 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 SRRQ9GZT4 340 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 SCP2D1Q9UJQ7 156 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 CNIH1O95406 144 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 CA2P00918 260 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 RLN1P04808 185 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 CD28P10747 220 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 CRIP2P52943 208 aaPredicted RBP11.23□□□□□ -0.61
NUP54-216ENST00000514901 TAS2R31P59538 309 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 RND3P61587 244 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 CD83Q01151 205 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 SURF2Q15527 256 aaPredicted RBP11.23□□□□□ -0.61
NUP54-216ENST00000514901 CNPY1Q3B7I2 92 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 PHLDA2Q53GA4 152 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 TEX38Q6PEX7 206 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 TOMM5Q8N4H5 51 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 TRIM63Q969Q1 353 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 SCGB3A2Q96PL1 93 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 CLCC1Q96S66 551 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 PLEKHA2Q9HB19 425 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 PARP11Q9NR21 331 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 SLC2A8Q9NY64 477 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 LINC00527Q9UJ94 153 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 TRRAPQ9Y4A5 3859 aa11.23□□□□□ -0.61
NUP54-216ENST00000514901 TCRBV4S1A1TA0A5B7 111 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 ATP6V0E1O15342 81 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 RAMP3O60896 148 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 OR2A4O95047 310 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 NQO2P16083 231 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 KLF9Q13886 244 aaPredicted RBP11.22□□□□□ -0.61
NUP54-216ENST00000514901 FXYD3Q14802 87 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 PRSS8Q16651 343 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 C2orf68Q2NKX9 166 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 TET2Q6N021 2002 aaPredicted RBP11.22□□□□□ -0.61
NUP54-216ENST00000514901 ZNF329Q86UD4 541 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 NDUFA11Q86Y39 141 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 MMD2Q8IY49 270 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 C11orf44Q8N8P7 122 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 CCDC71LQ8N9Z2 235 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 OR4A5Q8NH83 315 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 ARPC1AQ92747 370 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 RHOVQ96L33 236 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 TMEM68Q96MH6 324 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 OR2A7Q96R45 310 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 CITED2Q99967 270 aaPredicted RBP11.22□□□□□ -0.61
NUP54-216ENST00000514901 SLC2A9Q9NRM0 540 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 ZFP57Q9NU63 452 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 MCUBQ9NWR8 336 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 COMMD9Q9P000 198 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 TSSC4Q9Y5U2 329 aaPredicted RBP11.22□□□□□ -0.61
NUP54-216ENST00000514901 NUBP2Q9Y5Y2 271 aa11.22□□□□□ -0.61
NUP54-216ENST00000514901 TRAV41A0A0B4J266 112 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 MPPED1O15442 326 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 ACTL6BO94805 426 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 CTSDP07339 412 aaPredicted RBP11.21□□□□□ -0.61
NUP54-216ENST00000514901 ELANEP08246 267 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 SAA1P0DJI8 122 aaPredicted RBP11.21□□□□□ -0.61
NUP54-216ENST00000514901 PIGPP57054 158 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 CFHR3Q02985 330 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 FOXE3Q13461 319 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 POU2AF1Q16633 256 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 AKIRIN2Q53H80 203 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 FAAP20Q6NZ36 180 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 IDO2Q6ZQW0 420 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 TBC1D26Q86UD7 250 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 CADM3Q8N126 398 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 OR51S1Q8NGJ8 323 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 ABHD5Q8WTS1 349 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 TPSG1Q9NRR2 321 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 BET1LQ9NYM9 111 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 COPZ2Q9P299 210 aa11.21□□□□□ -0.61
NUP54-216ENST00000514901 C14orf166Q9Y224 244 aaKnown RBP11.21□□□□□ -0.61
NUP54-216ENST00000514901 B3GALNT1O75752 331 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 IGHG4P01861 327 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 EGR2P11161 476 aaPredicted RBP11.2□□□□□ -0.62
NUP54-216ENST00000514901 PPIFP30405 207 aaKnown RBP11.2□□□□□ -0.62
NUP54-216ENST00000514901 MAS1LP35410 378 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 LPAR6P43657 344 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 INPP1P49441 399 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 PPP5CP53041 499 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 ERVK-16P61578 105 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 GNB1P62873 340 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 NDPQ00604 133 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 PJVKQ0ZLH3 352 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 TCTEX1D4Q5JR98 221 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 CXorf66Q5JRM2 361 aaPredicted RBP11.2□□□□□ -0.62
NUP54-216ENST00000514901 PRR31Q5SQ13 230 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 TRIQKQ629K1 86 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 PUSL1Q8N0Z8 303 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms