RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 MYOZ3Q8TDC0 251 aa11.23□□□□□ -0.61
PTPRF-215ENST00000496447 C1orf100Q5SVJ3 147 aa11.23□□□□□ -0.61
PTPRF-215ENST00000496447 SLC25A33Q9BSK2 321 aa11.23□□□□□ -0.61
PTPRF-215ENST00000496447 MPDU1O75352 247 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 THY1P04216 161 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 MMP9P14780 707 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 BSPH1Q075Z2 132 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 LAIR2Q6ISS4 152 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 ATRAIDQ6UW56 229 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 NEU4Q8WWR8 484 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-215ENST00000496447 QTRT1Q9BXR0 403 aaKnown RBP11.22□□□□□ -0.61
PTPRF-215ENST00000496447 DNAJC4Q9NNZ3 241 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 G6PC2Q9NQR9 355 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 AURKAIP1Q9NWT8 199 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-215ENST00000496447 IL36RNQ9UBH0 155 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 KIF13BQ9NQT8 1826 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 ZNFX1Q9P2E3 1918 aaKnown RBP11.22□□□□□ -0.61
PTPRF-215ENST00000496447 UBE2L6O14933 153 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 LCN2P80188 198 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 FGFRL1Q8N441 504 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 IGKV3D-15A0A087WSY6 115 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 FAM181BA6NEQ2 426 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 IGKV3-15P01624 115 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 CECR9P0C854 216 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 OR5P3Q8WZ94 311 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 FAM168AQ92567 244 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 TDRD6O60522 2096 aaKnown RBP11.22□□□□□ -0.61
PTPRF-215ENST00000496447 IER3P46695 156 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 H2BFSP57053 126 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 FXYD3Q14802 87 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 LSM10Q969L4 123 aaKnown RBP11.22□□□□□ -0.61
PTPRF-215ENST00000496447 RSG1Q9BU20 258 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 COL25A1Q9BXS0 654 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-215ENST00000496447 TUBA4BQ9H853 241 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 ASXL3Q9C0F0 2248 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 NPIPB11E5RHQ5 1161 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 APCSP02743 223 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 MAS1LP35410 378 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 SERF2P84101 59 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 UNC119Q13432 240 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 ZNF841Q6ZN19 808 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 EEF1AKMT3Q96AZ1 226 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 SSBP3Q9BWW4 388 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-215ENST00000496447 ARID1AO14497 2285 aa11.22□□□□□ -0.61
PTPRF-215ENST00000496447 PARP14Q460N5 1801 aa11.21□□□□□ -0.61
PTPRF-215ENST00000496447 PSMB2P49721 201 aa11.21□□□□□ -0.61
PTPRF-215ENST00000496447 DLX1P56177 255 aa11.21□□□□□ -0.61
PTPRF-215ENST00000496447 HSPE1P61604 102 aaKnown RBP11.21□□□□□ -0.61
PTPRF-215ENST00000496447 RUNX1Q01196 453 aa11.21□□□□□ -0.61
PTPRF-215ENST00000496447 FADS6Q8N9I5 356 aa11.21□□□□□ -0.61
PTPRF-215ENST00000496447 REG1AP05451 166 aa11.21□□□□□ -0.61
PTPRF-215ENST00000496447 ZNF708P17019 499 aa11.21□□□□□ -0.61
PTPRF-215ENST00000496447 EGR4Q05215 589 aa11.21□□□□□ -0.61
PTPRF-215ENST00000496447 SCN10AQ9Y5Y9 1956 aa11.21□□□□□ -0.61
PTPRF-215ENST00000496447 TRBV5-7A0A0A0MS05 114 aa11.21□□□□□ -0.62
PTPRF-215ENST00000496447 KCNAB3O43448 404 aa11.21□□□□□ -0.62
PTPRF-215ENST00000496447 MDKP21741 143 aaPredicted RBP11.21□□□□□ -0.62
PTPRF-215ENST00000496447 NPBWR2P48146 333 aa11.21□□□□□ -0.62
PTPRF-215ENST00000496447 HERPUD1Q15011 391 aa11.21□□□□□ -0.62
PTPRF-215ENST00000496447 AMMECR1LQ6DCA0 310 aa11.21□□□□□ -0.62
PTPRF-215ENST00000496447 A0A0G2JMM0 328 aa11.21□□□□□ -0.62
PTPRF-215ENST00000496447 A0A1W2PPB8 328 aa11.21□□□□□ -0.62
PTPRF-215ENST00000496447 A0A1W2PRS3 328 aa11.21□□□□□ -0.62
PTPRF-215ENST00000496447 KIR3DP1A8MWS1 328 aa11.21□□□□□ -0.62
PTPRF-215ENST00000496447 IGKV3D-11A0A0A0MRZ8 115 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 NPIPB13A6NJU9 1138 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 MARCH11A6NNE9 402 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 NPIPB4C9JG80 1138 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 ZNRF1Q8ND25 227 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 Q96M66 194 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 OR5AC2Q9NZP5 309 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 WDR90Q96KV7 1748 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 ICE1Q9Y2F5 2266 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 NDUFS8O00217 210 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 RELQ04864 619 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-215ENST00000496447 C1orf162Q8NEQ5 155 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-215ENST00000496447 CRYBA2P53672 197 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 TMEM252Q8N6L7 170 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 GPR146Q96CH1 333 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 C5orf52A6NGY3 159 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 CA2P00918 260 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 CD8AP01732 235 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 SSTR5P35346 364 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 AQP3Q92482 292 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 RAMP1O60894 148 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 SOD3P08294 240 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 C19orf54Q5BKX5 351 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 WDFY1Q8IWB7 410 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 OR8A1Q8NGG7 326 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 HSPB7Q9UBY9 170 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 GPR132Q9UNW8 380 aa11.2□□□□□ -0.62
PTPRF-215ENST00000496447 S1PR2O95136 353 aa11.19□□□□□ -0.62
PTPRF-215ENST00000496447 ZXDCQ2QGD7 858 aaPredicted RBP11.19□□□□□ -0.62
PTPRF-215ENST00000496447 AHCTF1Q8WYP5 2266 aa11.19□□□□□ -0.62
PTPRF-215ENST00000496447 PSG9Q00887 426 aa11.19□□□□□ -0.62
PTPRF-215ENST00000496447 ALKBH7Q9BT30 221 aaPredicted RBP11.19□□□□□ -0.62
PTPRF-215ENST00000496447 YAE1D1Q9NRH1 226 aa11.19□□□□□ -0.62
PTPRF-215ENST00000496447 DOCK3Q8IZD9 2030 aa11.19□□□□□ -0.62
PTPRF-215ENST00000496447 EFNB1P98172 346 aa11.19□□□□□ -0.62
PTPRF-215ENST00000496447 SELENOHQ8IZQ5 122 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms