RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 PGPA6NDG6 321 aa16.35■□□□□ 0.21
COL27A1-207ENST00000494090 HLA-DQA1P01909 254 aa16.35■□□□□ 0.21
COL27A1-207ENST00000494090 C8orf88P0DMB2 117 aa16.35■□□□□ 0.21
COL27A1-207ENST00000494090 TMEM74BQ9NUR3 256 aa16.35■□□□□ 0.21
COL27A1-207ENST00000494090 TMEM238LA0A1B0GVL6 79 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 A6NJY4 79 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 ZNF25P17030 456 aaPredicted RBP16.34■□□□□ 0.21
COL27A1-207ENST00000494090 MUC15Q8N387 334 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 TM2D1Q9BX74 207 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 TGIF2-C20orf24A0A0A6YYL0 155 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 KBTBD11O94819 623 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 FAM53AQ6NSI3 398 aaPredicted RBP16.34■□□□□ 0.21
COL27A1-207ENST00000494090 NPIPB11E5RHQ5 1161 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 ZG16O60844 167 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 GLRXP35754 106 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 OR5P3Q8WZ94 311 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 EEF1AKMT3Q96AZ1 226 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 TIMP4Q99727 224 aa16.34■□□□□ 0.21
COL27A1-207ENST00000494090 MRPL32Q9BYC8 188 aaKnown RBP16.34■□□□□ 0.21
COL27A1-207ENST00000494090 APOBEC3AP31941 199 aaPredicted RBP16.33■□□□□ 0.21
COL27A1-207ENST00000494090 FADS6Q8N9I5 356 aa16.33■□□□□ 0.21
COL27A1-207ENST00000494090 HSPB9Q9BQS6 159 aa16.33■□□□□ 0.21
COL27A1-207ENST00000494090 ZNF236Q9UL36 1845 aa16.33■□□□□ 0.21
COL27A1-207ENST00000494090 RNF224P0DH78 156 aa16.33■□□□□ 0.21
COL27A1-207ENST00000494090 ZNF146Q15072 292 aa16.33■□□□□ 0.21
COL27A1-207ENST00000494090 OR51G1Q8NGK1 321 aa16.33■□□□□ 0.2
COL27A1-207ENST00000494090 ARF6P62330 175 aa16.33■□□□□ 0.2
COL27A1-207ENST00000494090 C1orf162Q8NEQ5 155 aaPredicted RBP16.33■□□□□ 0.2
COL27A1-207ENST00000494090 ELOVL1Q9BW60 279 aa16.33■□□□□ 0.2
COL27A1-207ENST00000494090 TIAF1O95411 115 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 FCGR2BP31994 310 aaPredicted RBP16.32■□□□□ 0.2
COL27A1-207ENST00000494090 RPL24P83731 157 aaKnown RBP16.32■□□□□ 0.2
COL27A1-207ENST00000494090 TP53RKQ96S44 253 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 PSMG3Q9BT73 122 aaPredicted RBP16.32■□□□□ 0.2
COL27A1-207ENST00000494090 CKS2P33552 79 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 NRN1LQ496H8 165 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 CCL19Q99731 98 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 CHCHD2Q9Y6H1 151 aaPredicted RBP16.32■□□□□ 0.2
COL27A1-207ENST00000494090 UNC13CQ8NB66 2214 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 TGFBR3LH3BV60 316 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 COPS9Q8WXC6 57 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 TCF19Q9Y242 345 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 RECKO95980 971 aa16.32■□□□□ 0.2
COL27A1-207ENST00000494090 APC2O95996 2303 aa16.31■□□□□ 0.2
COL27A1-207ENST00000494090 ZNF324O75467 553 aaPredicted RBP16.31■□□□□ 0.2
COL27A1-207ENST00000494090 TNFSF10P50591 281 aa16.31■□□□□ 0.2
COL27A1-207ENST00000494090 RNFT1Q5M7Z0 435 aa16.31■□□□□ 0.2
COL27A1-207ENST00000494090 DRAM1Q8N682 238 aa16.31■□□□□ 0.2
COL27A1-207ENST00000494090 COX6CP09669 75 aa16.31■□□□□ 0.2
COL27A1-207ENST00000494090 WDR25Q64LD2 544 aaPredicted RBP16.31■□□□□ 0.2
COL27A1-207ENST00000494090 PHLDA3Q9Y5J5 127 aa16.31■□□□□ 0.2
COL27A1-207ENST00000494090 TBX6O95947 436 aaPredicted RBP16.31■□□□□ 0.2
COL27A1-207ENST00000494090 AGAP20933 346 aa16.31■□□□□ 0.2
COL27A1-207ENST00000494090 GLIPR1P48060 266 aa16.31■□□□□ 0.2
COL27A1-207ENST00000494090 NPPCP23582 126 aa16.31■□□□□ 0.2
COL27A1-207ENST00000494090 ARL14EPLP0DKL9 152 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 COL5A1-AS1Q5SY13 56 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 C1QL2Q7Z5L3 287 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 NEU4Q8WWR8 484 aaPredicted RBP16.3■□□□□ 0.2
COL27A1-207ENST00000494090 HIST1H2BAQ96A08 127 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 SPSB4Q96A44 273 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 FOXJ2Q9P0K8 574 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 SMIM12Q96EX1 92 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 OR51M1Q9H341 326 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 TRGC1P0CF51 173 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 SSTR5P35346 364 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 FHITP49789 147 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 ZNF502Q8TBZ5 544 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 ZNF703Q9H7S9 590 aaPredicted RBP16.3■□□□□ 0.2
COL27A1-207ENST00000494090 PLXNA1Q9UIW2 1896 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 CEACAM1P13688 526 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 ANOS1P23352 680 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 NUP37Q8NFH4 326 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 MRPL18Q9H0U6 180 aaKnown RBP16.3■□□□□ 0.2
COL27A1-207ENST00000494090 MAP1LC3AQ9H492 121 aa16.3■□□□□ 0.2
COL27A1-207ENST00000494090 IGKV1D-43A0A0B4J1Z2 117 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 RAMP1O60894 148 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 CDX1P47902 265 aaPredicted RBP16.29■□□□□ 0.2
COL27A1-207ENST00000494090 CX3CL1P78423 397 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 BRCA1P38398 1863 aaKnown RBP16.29■□□□□ 0.2
COL27A1-207ENST00000494090 NEUROG3Q9Y4Z2 214 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 AMY1AP04745 511 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 SNRPD3P62318 126 aaKnown RBP16.29■□□□□ 0.2
COL27A1-207ENST00000494090 ZNF506Q5JVG8 444 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 RAB37Q96AX2 223 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 RALGAPA2Q2PPJ7 1873 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 ANKRD36A6QL64 1941 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 A0A0B4J293 547 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 LOC389332A0A1B0GUA5 103 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 IGLV3-19P01714 112 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 LINC00518Q8N0U6 118 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 PNKDQ8N490 385 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 FDCSPQ8NFU4 85 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 BRWD3Q6RI45 1802 aa16.29■□□□□ 0.2
COL27A1-207ENST00000494090 FXYD3Q14802 87 aa16.28■□□□□ 0.2
COL27A1-207ENST00000494090 OR4B1Q8NGF8 309 aa16.28■□□□□ 0.2
COL27A1-207ENST00000494090 MOB4Q9Y3A3 225 aa16.28■□□□□ 0.2
COL27A1-207ENST00000494090 LNP1A1A4G5 178 aa16.28■□□□□ 0.2
COL27A1-207ENST00000494090 TM4SF5O14894 197 aa16.28■□□□□ 0.2
COL27A1-207ENST00000494090 BTF3P20290 206 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms