RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TMEM191AQ9H0A3 160 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 SEBOXQ9HB31 216 aaPredicted RBP13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 PCNX2A6NKB5 2137 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 TICRRQ7Z2Z1 1910 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 hCG_38984A0A1B0GV85 526 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 CD3EP07766 207 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 WNT5AP41221 380 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 ZCCHC14Q8WYQ9 949 aaKnown RBP13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 OR2V2Q96R30 315 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 ONECUT1Q9UBC0 465 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 IGKV1-9A0A0C4DH69 117 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 PINLYPA6NC86 204 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 RAB29O14966 203 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 KCNMB1Q16558 191 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 GAL3ST2Q9H3Q3 398 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 FBLN5Q9UBX5 448 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 TGIF2LYQ8IUE0 185 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 HEATR1Q9H583 2144 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 IGLV3-32A0A0A0MS00 114 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 CXorf1O96002 111 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 S100A7AQ86SG5 101 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 CEP350Q5VT06 3117 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 APCSP02743 223 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 GABRA6Q16445 453 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 FA2HQ7L5A8 372 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 LHFPL1Q86WI0 220 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 IMMP2LQ96T52 175 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.86□□□□□ -0.193e-6■■□□□ 11.5
CCDC88B-209ENST00000494080 HBZP02008 142 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 CD1BP29016 333 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 TFPI2P48307 235 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 GNB2P62879 340 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 NHLH1Q02575 133 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 C1orf185Q5T7R7 199 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 LINC00596Q86U02 117 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 OR4S2Q8NH73 311 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 OR1L1Q8NH94 360 aa13.86□□□□□ -0.19
CCDC88B-209ENST00000494080 DLEU1O43261 78 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 SELLP14151 372 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 MFAP2P55001 183 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 VMA21Q3ZAQ7 101 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 PSMG3Q9BT73 122 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 TM2D1Q9BX74 207 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 CLDN14O95500 239 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 VWA1Q6PCB0 445 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 FGFRL1Q8N441 504 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 ITLN1Q8WWA0 313 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 IGHV2-5P01817 119 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 COX5BP10606 129 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 NUBP1P53384 320 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 RPL23P62829 140 aaKnown RBP13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 WDFY1Q8IWB7 410 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 RPEQ96AT9 228 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 C10orf91Q5T1B1 145 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 ZNF664Q8N3J9 261 aa13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 TECRQ9NZ01 308 aaKnown RBP13.85□□□□□ -0.19
CCDC88B-209ENST00000494080 OPRK1P41145 380 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 BPIFB3P59826 476 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 CCL13Q99616 98 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 LINC00470Q9BZP3 86 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 TMEM167BQ9NRX6 74 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 TRBV24-1A0A075B6N3 115 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 RHBDL1O75783 438 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 UBE2L3P68036 154 aaKnown RBP13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 OR2D3Q8NGH3 330 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 TMEM170AQ8WVE7 144 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 GNB4Q9HAV0 340 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 HES4Q9HCC6 221 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 OR1A1Q9P1Q5 309 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 NEURL1O76050 574 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 LCN2P80188 198 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 FHL1Q13642 323 aa13.84□□□□□ -0.19
CCDC88B-209ENST00000494080 WISP1O95388 367 aa13.83□□□□□ -0.19
CCDC88B-209ENST00000494080 CT45A10P0DMU9 189 aa13.83□□□□□ -0.19
CCDC88B-209ENST00000494080 RNF144BQ7Z419 303 aa13.83□□□□□ -0.19
CCDC88B-209ENST00000494080 MT-ND6P03923 174 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 OR5AL1P0C617 328 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 FOXG1P55316 489 aaPredicted RBP13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 SAPCD1Q5SSQ6 148 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 MIEN1Q9BRT3 115 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 QTRT1Q9BXR0 403 aaKnown RBP13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 SHANK1Q9Y566 2161 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 EREGO14944 169 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 CD59P13987 128 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 REG1BP48304 166 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 LHX2P50458 406 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 ST6GALNAC3Q8NDV1 305 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 FGFBP3Q8TAT2 258 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 TMEM45BQ96B21 275 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 SFRP2Q96HF1 295 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 LYZL4Q96KX0 146 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 TMEM56Q96MV1 263 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 WNT10AQ9GZT5 417 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 IL36RNQ9UBH0 155 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 HTR1DP28221 377 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 SRIP30626 198 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 PTGDSP41222 190 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 ZIC4Q8N9L1 334 aa13.83□□□□□ -0.2
CCDC88B-209ENST00000494080 ZNF716A6NP11 495 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 NCBP2LA6PVI3 153 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms