RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CXorf66Q5JRM2 361 aaPredicted RBP17.5■□□□□ 0.39
SMC4-221ENST00000489573 LHFPL4Q7Z7J7 247 aa17.5■□□□□ 0.39
SMC4-221ENST00000489573 MOB3BQ86TA1 216 aa17.5■□□□□ 0.39
SMC4-221ENST00000489573 VKORC1L1Q8N0U8 176 aa17.5■□□□□ 0.39
SMC4-221ENST00000489573 FLYWCH2Q96CP2 140 aaKnown RBP17.5■□□□□ 0.39
SMC4-221ENST00000489573 TMEM140Q9NV12 185 aa17.5■□□□□ 0.39
SMC4-221ENST00000489573 TNFSF18Q9UNG2 199 aa17.5■□□□□ 0.39
SMC4-221ENST00000489573 ABCA2Q9BZC7 2435 aa17.5■□□□□ 0.39
SMC4-221ENST00000489573 ANKRD17O75179 2603 aaKnown RBP17.5■□□□□ 0.39
SMC4-221ENST00000489573 A0A1W2PPI3 338 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 FAM90A9PA6NNJ1 464 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 ARHGDIBP52566 201 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 LGALSLQ3ZCW2 172 aaPredicted RBP17.49■□□□□ 0.39
SMC4-221ENST00000489573 OR4C13Q8NGP0 309 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 RHOVQ96L33 236 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 HARBI1Q96MB7 349 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 AIFM2Q9BRQ8 373 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 PLSCR3Q9NRY6 295 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 RCL1Q9Y2P8 373 aaKnown RBP17.49■□□□□ 0.39
SMC4-221ENST00000489573 BOLA1Q9Y3E2 137 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 TBL2Q9Y4P3 447 aaKnown RBP17.49■□□□□ 0.39
SMC4-221ENST00000489573 AUP1Q9Y679 476 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 L7N2F9 121 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 SHOXO15266 292 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 NXPH3O95157 252 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 CXCL2P19875 107 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 GATA3P23771 443 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 OR8H3Q8N146 312 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 RBMXL1Q96E39 390 aaKnown RBP17.49■□□□□ 0.39
SMC4-221ENST00000489573 MFFQ9GZY8 342 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.49■□□□□ 0.39
SMC4-221ENST00000489573 HIF1ANQ9NWT6 349 aa17.49■□□□□ 0.39
SMC4-221ENST00000489573 MED13LQ71F56 2210 aa17.48■□□□□ 0.39
SMC4-221ENST00000489573 IGHV3-72A0A0B4J1Y9 119 aa17.48■□□□□ 0.39
SMC4-221ENST00000489573 OOSP1A8MZH6 123 aa17.48■□□□□ 0.39
SMC4-221ENST00000489573 WRBO00258 174 aa17.48■□□□□ 0.39
SMC4-221ENST00000489573 OR9G9P0C7N8 305 aa17.48■□□□□ 0.39
SMC4-221ENST00000489573 POLR2GP62487 172 aaKnown RBP eCLIP17.48■□□□□ 0.39
SMC4-221ENST00000489573 MAGT1Q9H0U3 335 aa17.48■□□□□ 0.39
SMC4-221ENST00000489573 HILPDAQ9Y5L2 63 aa17.48■□□□□ 0.39
SMC4-221ENST00000489573 TACC2O95359 2948 aa17.47■□□□□ 0.39
SMC4-221ENST00000489573 FAM90A26D6RGX4 464 aa17.47■□□□□ 0.39
SMC4-221ENST00000489573 E5RGE8 158 aa17.47■□□□□ 0.39
SMC4-221ENST00000489573 OR4A47Q6IF82 309 aa17.47■□□□□ 0.39
SMC4-221ENST00000489573 INO80EQ8NBZ0 244 aaPredicted RBP17.47■□□□□ 0.39
SMC4-221ENST00000489573 MAPK1IP1LQ8NDC0 245 aa17.47■□□□□ 0.39
SMC4-221ENST00000489573 NSG2Q9Y328 171 aa17.47■□□□□ 0.39
SMC4-221ENST00000489573 POLQO75417 2590 aa17.46■□□□□ 0.39
SMC4-221ENST00000489573 CENPVL3A0A0U1RRI6 287 aa17.46■□□□□ 0.39
SMC4-221ENST00000489573 RNF222A6NCQ9 220 aa17.46■□□□□ 0.39
SMC4-221ENST00000489573 SRRM4A7MD48 611 aaKnown RBP17.46■□□□□ 0.39
SMC4-221ENST00000489573 SSSCA1O60232 199 aa17.46■□□□□ 0.39
SMC4-221ENST00000489573 RBMXL2O75526 392 aaKnown RBP17.46■□□□□ 0.39
SMC4-221ENST00000489573 PVALBP20472 110 aaPredicted RBP17.46■□□□□ 0.39
SMC4-221ENST00000489573 RPS16P62249 146 aaKnown RBP17.46■□□□□ 0.39
SMC4-221ENST00000489573 CCDC144NLQ6NUI1 221 aa17.46■□□□□ 0.39
SMC4-221ENST00000489573 MS4A7Q9GZW8 240 aaPredicted RBP17.46■□□□□ 0.39
SMC4-221ENST00000489573 C7orf69Q9H7B7 122 aa17.46■□□□□ 0.39
SMC4-221ENST00000489573 ABCA12Q86UK0 2595 aa17.46■□□□□ 0.39
SMC4-221ENST00000489573 TIMM23O14925 209 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 NPFFO15130 113 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 NUP62P37198 522 aaPredicted RBP17.45■□□□□ 0.38
SMC4-221ENST00000489573 ZNF345Q14585 488 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 ACOT7LQ6ZUV0 252 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 OR4A16Q8NH70 328 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 ITPR2Q14571 2701 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 OR2F2O95006 317 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 SAA1P0DJI8 122 aaPredicted RBP17.45■□□□□ 0.38
SMC4-221ENST00000489573 IGHV4-31P0DP07 118 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 OR2B8PP59922 312 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 RELBQ01201 579 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 OR2F1Q13607 317 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 HABP2Q14520 560 aaPredicted RBP17.45■□□□□ 0.38
SMC4-221ENST00000489573 SSX2Q16385 188 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 AARDQ4LEZ3 155 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 CFHR4Q92496 578 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 FOXC2Q99958 501 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 C11orf1Q9H5F2 150 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 BET1LQ9NYM9 111 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 HSPB7Q9UBY9 170 aa17.45■□□□□ 0.38
SMC4-221ENST00000489573 KCNAB3O43448 404 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 SYNGR2O43760 224 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 C4BPBP20851 252 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 CD1BP29016 333 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 SAA4P35542 130 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 LGALS7P47929 136 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 AP2S1P53680 142 aaPredicted RBP17.44■□□□□ 0.38
SMC4-221ENST00000489573 VAMP2P63027 116 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 TNFRSF9Q07011 255 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 TMEM249Q2WGJ8 235 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 PUSL1Q8N0Z8 303 aaKnown RBP17.44■□□□□ 0.38
SMC4-221ENST00000489573 C17orf50Q8WW18 174 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 MALSU1Q96EH3 234 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 AQP10Q96PS8 301 aa17.44■□□□□ 0.38
SMC4-221ENST00000489573 QTRT1Q9BXR0 403 aaKnown RBP17.44■□□□□ 0.38
SMC4-221ENST00000489573 WNK2Q9Y3S1 2297 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 TRAV3A0A0B4J244 114 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 TRAV40A0A0B4J280 105 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 IGHV1-69DA0A0B4J2H0 117 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 A0A0D9SG52 128 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms