RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 FXYD4P59646 89 aa16.36■□□□□ 0.21
LIME1-207ENST00000489212 ZNF66Q6ZN08 573 aa16.36■□□□□ 0.21
LIME1-207ENST00000489212 VKORC1L1Q8N0U8 176 aa16.36■□□□□ 0.21
LIME1-207ENST00000489212 GIMAP1Q8WWP7 306 aa16.36■□□□□ 0.21
LIME1-207ENST00000489212 RHOVQ96L33 236 aa16.36■□□□□ 0.21
LIME1-207ENST00000489212 SLA2Q9H6Q3 261 aa16.36■□□□□ 0.21
LIME1-207ENST00000489212 ZNF430Q9H8G1 570 aaPredicted RBP16.36■□□□□ 0.21
LIME1-207ENST00000489212 MRPS7Q9Y2R9 242 aaKnown RBP16.36■□□□□ 0.21
LIME1-207ENST00000489212 DNAH9Q9NYC9 4486 aa16.36■□□□□ 0.21
LIME1-207ENST00000489212 IGHV4OR15-8A0A075B7B6 117 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 A0A087WW49 117 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 MSGN1A6NI15 193 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 SEC14L6B5MCN3 397 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 APOA1P02647 267 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 TRGV3P03979 118 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 APELAP0DMC3 54 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 NAT1P18440 290 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 RFX2P48378 723 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 ALDH3B2P48448 385 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 MSMO1Q15800 293 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 TNXAQ16473 311 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 GPR107Q5VW38 600 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 OR4S2Q8NH73 311 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 CMTM3Q96MX0 182 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 MRPS26Q9BYN8 205 aaKnown RBP16.35■□□□□ 0.21
LIME1-207ENST00000489212 SLC5A7Q9GZV3 580 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 ZNF355PQ9NSJ1 428 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 SCOCQ9UIL1 159 aa16.35■□□□□ 0.21
LIME1-207ENST00000489212 HPGDSO60760 199 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 ELK1P19419 428 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 CD40LGP29965 261 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 PRSS3P35030 304 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 RORCP51449 518 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 SLURP1P55000 103 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 C9orf66Q5T8R8 295 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 SRSF12Q8WXF0 261 aaKnown RBP16.34■□□□□ 0.21
LIME1-207ENST00000489212 ACOT12Q8WYK0 555 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 DCUN1D4Q92564 292 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 TMEM68Q96MH6 324 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 EHFQ9NZC4 300 aa16.34■□□□□ 0.21
LIME1-207ENST00000489212 LINC01619G3V211 115 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 H3BUA1 57 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 PMP2P02689 132 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 DEFA5Q01523 94 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 C10orf55Q5SWW7 151 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 ZNF818PQ6ZRF7 136 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 TMEM17Q86X19 198 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 LYSMD2Q8IV50 215 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 ZBTB34Q8NCN2 500 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 GPX8Q8TED1 209 aa16.33■□□□□ 0.2
LIME1-207ENST00000489212 DLX4Q92988 240 aaPredicted RBP16.33■□□□□ 0.2
LIME1-207ENST00000489212 RAMP3O60896 148 aa16.32■□□□□ 0.2
LIME1-207ENST00000489212 DYRK1AQ13627 763 aa16.32■□□□□ 0.2
LIME1-207ENST00000489212 DHRS11Q6UWP2 260 aa16.32■□□□□ 0.2
LIME1-207ENST00000489212 PUSL1Q8N0Z8 303 aaKnown RBP16.32■□□□□ 0.2
LIME1-207ENST00000489212 PHB2Q99623 299 aa16.32■□□□□ 0.2
LIME1-207ENST00000489212 RBMXL2O75526 392 aaKnown RBP16.31■□□□□ 0.2
LIME1-207ENST00000489212 BRI3O95415 125 aa16.31■□□□□ 0.2
LIME1-207ENST00000489212 HSPB1P04792 205 aaKnown RBP16.31■□□□□ 0.2
LIME1-207ENST00000489212 GNRHRP30968 328 aa16.31■□□□□ 0.2
LIME1-207ENST00000489212 DGCR2P98153 550 aa16.31■□□□□ 0.2
LIME1-207ENST00000489212 SNX29P2Q8IUI4 249 aa16.31■□□□□ 0.2
LIME1-207ENST00000489212 MMD2Q8IY49 270 aa16.31■□□□□ 0.2
LIME1-207ENST00000489212 ADAD2Q8NCV1 583 aaKnown RBP16.31■□□□□ 0.2
LIME1-207ENST00000489212 ZNF2Q9BSG1 426 aaPredicted RBP16.31■□□□□ 0.2
LIME1-207ENST00000489212 TINAGL1Q9GZM7 467 aaPredicted RBP16.31■□□□□ 0.2
LIME1-207ENST00000489212 SMIM31A0A1B0GVY4 71 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 SULT1C2O00338 296 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 OVOL1O14753 267 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 KBTBD11O94819 623 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 OR2A4O95047 310 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 HLA-DMAP28067 261 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 KIR2DS2P43631 304 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 TAS2R46P59540 309 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 HERV-K104P61576 105 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 GPR141Q7Z602 305 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 SPAG16Q8N0X2 631 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 OR5H2Q8NGV7 314 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 TMEM167AQ8TBQ9 72 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 MOB3AQ96BX8 217 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 OR2A7Q96R45 310 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 COA4Q9NYJ1 87 aa16.3■□□□□ 0.2
LIME1-207ENST00000489212 C13orf42A0A1B0GVH6 325 aa16.29■□□□□ 0.2
LIME1-207ENST00000489212 CREBL2O60519 120 aaPredicted RBP16.29■□□□□ 0.2
LIME1-207ENST00000489212 OR9G9P0C7N8 305 aa16.29■□□□□ 0.2
LIME1-207ENST00000489212 ZNF182P17025 639 aaPredicted RBP16.29■□□□□ 0.2
LIME1-207ENST00000489212 HRH1P35367 487 aa16.29■□□□□ 0.2
LIME1-207ENST00000489212 SSX9Q7RTT3 188 aa16.29■□□□□ 0.2
LIME1-207ENST00000489212 SCPEP1Q9HB40 452 aa16.29■□□□□ 0.2
LIME1-207ENST00000489212 SORL1Q92673 2214 aa16.29■□□□□ 0.2
LIME1-207ENST00000489212 COL7A1Q02388 2944 aa16.28■□□□□ 0.2
LIME1-207ENST00000489212 A0A1B0GW64 132 aa16.28■□□□□ 0.2
LIME1-207ENST00000489212 E7EUB6 86 aa16.28■□□□□ 0.2
LIME1-207ENST00000489212 RBFOX2O43251 390 aaKnown RBP eCLIP16.28■□□□□ 0.2
LIME1-207ENST00000489212 ACTL6BO94805 426 aa16.28■□□□□ 0.2
LIME1-207ENST00000489212 DEFB121Q5J5C9 76 aa16.28■□□□□ 0.2
LIME1-207ENST00000489212 MZT2AQ6P582 158 aa16.28■□□□□ 0.2
LIME1-207ENST00000489212 OR51H1Q8NH63 302 aa16.28■□□□□ 0.2
LIME1-207ENST00000489212 VSTM2AQ8TAG5 236 aa16.28■□□□□ 0.2
LIME1-207ENST00000489212 AP3S1Q92572 193 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms