RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 DCUN1D5Q9BTE7 237 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 RIMS4Q9H426 269 aaPredicted RBP6.77□□□□□ -1.33
COL17A1-207ENST00000488320 ZNF430Q9H8G1 570 aaPredicted RBP6.77□□□□□ -1.33
COL17A1-207ENST00000488320 AMBNQ9NP70 447 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 PLEKHJ1Q9NW61 149 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 RDH8Q9NYR8 311 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 LRP1BQ9NZR2 4599 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 TRBV7-1A0A0A6YYK4 115 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 CRYZL1O95825 349 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 NAPSAO96009 420 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 DHFRP00374 187 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 CA1P00915 261 aaPredicted RBP6.76□□□□□ -1.33
COL17A1-207ENST00000488320 IFNA21P01568 189 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 IFNA17P01571 189 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 DEFA4P12838 97 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 RPA2P15927 270 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 CMC4P56277 68 aaPredicted RBP6.76□□□□□ -1.33
COL17A1-207ENST00000488320 ZNF124Q15973 351 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 CCDC58Q4VC31 144 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 C10orf55Q5SWW7 151 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 PLET1Q6UQ28 207 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 Q6ZTC4 211 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 UBE2DNLQ8IWF7 75 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 CDH26Q8IXH8 852 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 MMD2Q8IY49 270 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 FYTTD1Q96QD9 318 aaKnown RBP6.76□□□□□ -1.33
COL17A1-207ENST00000488320 RNF126Q9BV68 326 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 HRH4Q9H3N8 390 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 SDHAF2Q9NX18 166 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 GHRLQ9UBU3 117 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 MGAT4AQ9UM21 535 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 RBM7Q9Y580 266 aaKnown RBP6.76□□□□□ -1.33
COL17A1-207ENST00000488320 ORC6Q9Y5N6 252 aa6.76□□□□□ -1.33
COL17A1-207ENST00000488320 CTSDP07339 412 aaPredicted RBP6.75□□□□□ -1.33
COL17A1-207ENST00000488320 TFPI2P48307 235 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 CDK10Q15131 360 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 Q499Y3 187 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 XAF1Q6GPH4 301 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 OR10K2Q6IF99 312 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 TMPRSS11AQ6ZMR5 421 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 CEACAM19Q7Z692 300 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 OR52I1Q8NGK6 324 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 Q96MT0 163 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 NDUFAF3Q9BU61 184 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 OR2D2Q9H210 308 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 POMPQ9Y244 141 aa6.75□□□□□ -1.33
COL17A1-207ENST00000488320 APOBP04114 4563 aaKnown RBP6.74□□□□□ -1.33
COL17A1-207ENST00000488320 DEFB131BA0A096LNP1 70 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 TRBV5-5A0A0J9YX44 114 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 NPIPB5A8MRT5 1133 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 MRPS14O60783 128 aaKnown RBP6.74□□□□□ -1.33
COL17A1-207ENST00000488320 HIST1H1BP16401 226 aaKnown RBP6.74□□□□□ -1.33
COL17A1-207ENST00000488320 PSMB6P28072 239 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 HTR2CP28335 458 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 GPR183P32249 361 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 RPS27AP62979 156 aaKnown RBP6.74□□□□□ -1.33
COL17A1-207ENST00000488320 ZIK1Q3SY52 487 aaPredicted RBP6.74□□□□□ -1.33
COL17A1-207ENST00000488320 C1orf134Q5TEV5 83 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 OR6M1Q8NGM8 313 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 OSR1Q8TAX0 266 aaPredicted RBP6.74□□□□□ -1.33
COL17A1-207ENST00000488320 SMIM19Q96E16 107 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 CXorf58Q96LI9 332 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 FANCD2OSQ96PS1 177 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 UQCC2Q9BRT2 126 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 HDHD3Q9BSH5 251 aaPredicted RBP6.74□□□□□ -1.33
COL17A1-207ENST00000488320 CHRDL1Q9BU40 450 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 TMEM59Q9BXS4 323 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 BABAM2Q9NXR7 383 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 AK3Q9UIJ7 227 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 DNAH5Q8TE73 4624 aa6.74□□□□□ -1.33
COL17A1-207ENST00000488320 IGKV3-7A0A075B6H7 116 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 TRBV6-6A0A0A6YYG2 114 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 SAC3D1A6NKF1 404 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 TEX22C9J3V5 150 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 BET1O15155 118 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 GYG2O15488 501 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 OGG1O15527 345 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 UBBP0CG47 229 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 LIMS3P0CW19 117 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 LIMS4P0CW20 117 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 SAA1P0DJI8 122 aaPredicted RBP6.73□□□□□ -1.33
COL17A1-207ENST00000488320 RPL27AP46776 148 aaKnown RBP6.73□□□□□ -1.33
COL17A1-207ENST00000488320 PSMD7P51665 324 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 RBMY1FQ15415 496 aaKnown RBP6.73□□□□□ -1.33
COL17A1-207ENST00000488320 YIF1BQ5BJH7 314 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 OR2G6Q5TZ20 316 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 GGHQ92820 318 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 ADTRPQ96IZ2 230 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 NICN1Q9BSH3 213 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 C20orf24Q9BUV8 137 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 OR51E2Q9H255 320 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 Q9N2K0 584 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 MED4Q9NPJ6 270 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 SLC2A9Q9NRM0 540 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 OAZ3Q9UMX2 235 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 AP4S1Q9Y587 144 aa6.73□□□□□ -1.33
COL17A1-207ENST00000488320 TRBV5-7A0A0A0MS05 114 aa6.72□□□□□ -1.33
COL17A1-207ENST00000488320 IGHV4-28A0A0C4DH34 117 aa6.72□□□□□ -1.33
COL17A1-207ENST00000488320 IGKV1-6A0A0C4DH72 117 aa6.72□□□□□ -1.33
COL17A1-207ENST00000488320 MFSD2BA6NFX1 497 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms