RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 SLC35D1Q9NTN3 355 aa9.5□□□□□ -0.89
SDC3-204ENST00000487984 V9GYH0 126 aa9.5□□□□□ -0.89
SDC3-204ENST00000487984 TRAV18A0A075B6X5 111 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 IGHV4OR15-8A0A075B7B6 117 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 A0A087WW49 117 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 TRBV6-7A0A0A0MS04 114 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 RAB27BO00194 218 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 ARPC1BO15143 372 aaKnown RBP9.49□□□□□ -0.89
SDC3-204ENST00000487984 CTDSPLO15194 276 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 SAP30O75446 220 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 LY86O95711 162 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 IGLV2-23P01705 113 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 OR8U9P0C7N5 309 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 NHLRC4P0CG21 123 aaPredicted RBP9.49□□□□□ -0.89
SDC3-204ENST00000487984 GSTT2P0CG29 244 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 GSTT2BP0CG30 244 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 HIST1H1DP16402 221 aaKnown RBP9.49□□□□□ -0.89
SDC3-204ENST00000487984 INPP1P49441 399 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 TPPP2P59282 170 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 TAS2R20P59543 309 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 FXYD3Q14802 87 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 HACD4Q5VWC8 232 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 TRIQKQ629K1 86 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 Q8N402 240 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 OR10J5Q8NHC4 309 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 GRPEL2Q8TAA5 225 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 SRRQ9GZT4 340 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 SCPEP1Q9HB40 452 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.49□□□□□ -0.89
SDC3-204ENST00000487984 SDHAF2Q9NX18 166 aa9.49□□□□□ -0.89
SDC3-204ENST00000487984 ZNF230Q9UIE0 474 aaPredicted RBP9.49□□□□□ -0.89
SDC3-204ENST00000487984 SULT1C2O00338 296 aa9.48□□□□□ -0.89
SDC3-204ENST00000487984 DIRAS3O95661 229 aa9.48□□□□□ -0.89
SDC3-204ENST00000487984 PRSS3P35030 304 aa9.48□□□□□ -0.89
SDC3-204ENST00000487984 SSBP2P81877 361 aaPredicted RBP9.48□□□□□ -0.89
SDC3-204ENST00000487984 PJVKQ0ZLH3 352 aa9.48□□□□□ -0.89
SDC3-204ENST00000487984 SNX29P2Q8IUI4 249 aa9.48□□□□□ -0.89
SDC3-204ENST00000487984 FCAMRQ8WWV6 532 aa9.48□□□□□ -0.89
SDC3-204ENST00000487984 RHOVQ96L33 236 aa9.48□□□□□ -0.89
SDC3-204ENST00000487984 ASCL2Q99929 193 aa9.48□□□□□ -0.89
SDC3-204ENST00000487984 AUNIPQ9H7T9 357 aa9.48□□□□□ -0.89
SDC3-204ENST00000487984 STAB2Q8WWQ8 2551 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 GABARAPH6UMI1 98 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 J3QRK9 145 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 GSTZ1O43708 216 aaPredicted RBP9.47□□□□□ -0.89
SDC3-204ENST00000487984 HLA-DQB1P01920 261 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 TRGV3P03979 118 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 HSPB1P04792 205 aaKnown RBP9.47□□□□□ -0.89
SDC3-204ENST00000487984 CRYGBP07316 175 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 CBX5P45973 191 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 LGALS7P47929 136 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 DEFA1P59665 94 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 DEFA3P59666 94 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 AP3S2P59780 193 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 SSBP1Q04837 148 aaKnown RBP9.47□□□□□ -0.89
SDC3-204ENST00000487984 ZNF79Q15937 498 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 CDNFQ49AH0 187 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 ACSM6Q6P461 480 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 POC5Q8NA72 575 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 HARBI1Q96MB7 349 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 ABHD1Q96SE0 405 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 SLA2Q9H6Q3 261 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 ELF5Q9UKW6 265 aaPredicted RBP9.47□□□□□ -0.89
SDC3-204ENST00000487984 U3KQK5 164 aa9.47□□□□□ -0.89
SDC3-204ENST00000487984 IGKV1D-8A0A087WSZ0 117 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 SRRM4A7MD48 611 aaKnown RBP9.46□□□□□ -0.9
SDC3-204ENST00000487984 UPK1BO75841 260 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 CNIH1O95406 144 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 SPNP16150 400 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 GNG2P59768 71 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 ARFRP1Q13795 201 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 SRSF7Q16629 238 aaKnown RBP eCLIP9.46□□□□□ -0.9
SDC3-204ENST00000487984 TMEM177Q53S58 311 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 Q6ZS49 121 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 H1FOOQ8IZA3 346 aaPredicted RBP9.46□□□□□ -0.9
SDC3-204ENST00000487984 BVESQ8NE79 360 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 OR5T1Q8NG75 326 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 SMIM4Q8WVI0 70 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 GINS4Q9BRT9 223 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 THAP7Q9BT49 309 aaPredicted RBP9.46□□□□□ -0.9
SDC3-204ENST00000487984 ZNF355PQ9NSJ1 428 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 TAS2R8Q9NYW2 309 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 RBM7Q9Y580 266 aaKnown RBP9.46□□□□□ -0.9
SDC3-204ENST00000487984 SMAD5-AS1Q9Y6J3 95 aa9.46□□□□□ -0.9
SDC3-204ENST00000487984 H3BUA1 57 aa9.45□□□□□ -0.9
SDC3-204ENST00000487984 SHOXO15266 292 aa9.45□□□□□ -0.9
SDC3-204ENST00000487984 DTYMKP23919 212 aa9.45□□□□□ -0.9
SDC3-204ENST00000487984 TAGLNQ01995 201 aaKnown RBP9.45□□□□□ -0.9
SDC3-204ENST00000487984 CBX3Q13185 183 aa9.45□□□□□ -0.9
SDC3-204ENST00000487984 RTL8BQ17RB0 113 aa9.45□□□□□ -0.9
SDC3-204ENST00000487984 MRGPRG-AS1Q2M3A8 158 aa9.45□□□□□ -0.9
SDC3-204ENST00000487984 DEDD2Q8WXF8 326 aa9.45□□□□□ -0.9
SDC3-204ENST00000487984 DDB2Q92466 427 aa9.45□□□□□ -0.9
SDC3-204ENST00000487984 C13orf42A0A1B0GVH6 325 aa9.44□□□□□ -0.9
SDC3-204ENST00000487984 TMEM235A6NFC5 223 aa9.44□□□□□ -0.9
SDC3-204ENST00000487984 LINC00473A8K010 186 aa9.44□□□□□ -0.9
SDC3-204ENST00000487984 CENPXA8MT69 81 aa9.44□□□□□ -0.9
SDC3-204ENST00000487984 RRASP10301 218 aa9.44□□□□□ -0.9
SDC3-204ENST00000487984 IL7P13232 177 aa9.44□□□□□ -0.9
SDC3-204ENST00000487984 GP9P14770 177 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms