RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 PCGF1Q9BSM1 259 aa6.25□□□□□ -1.41
COL6A3-208ENST00000468792 TMEM147Q9BVK8 224 aa6.25□□□□□ -1.41
COL6A3-208ENST00000468792 UNKLQ9H9P5 680 aaKnown RBP6.25□□□□□ -1.41
COL6A3-208ENST00000468792 TREM1Q9NP99 234 aa6.25□□□□□ -1.41
COL6A3-208ENST00000468792 TMEM14BQ9NUH8 114 aa6.25□□□□□ -1.41
COL6A3-208ENST00000468792 FKBP11Q9NYL4 201 aa6.25□□□□□ -1.41
COL6A3-208ENST00000468792 ARFGEF3Q5TH69 2177 aa6.25□□□□□ -1.41
COL6A3-208ENST00000468792 ITPR1Q14643 2758 aa6.25□□□□□ -1.41
COL6A3-208ENST00000468792 SMG1Q96Q15 3661 aaKnown RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 ROS1P08922 2347 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 A0A1W2PPH5 198 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 C15orf61A6NNL5 157 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 H3BP45 60 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 ATXN7O15265 892 aaPredicted RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 FCN3O75636 299 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 OR9G9P0C7N8 305 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 CT45A6P0DMU7 189 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 CT45A5P0DMU8 189 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 CT45A7P0DMV0 189 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 NDUFB7P17568 137 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 PAX6P26367 422 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 TAGLN2P37802 199 aaKnown RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 ID4P47928 161 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 HSPE1P61604 102 aaKnown RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 SRSF3P84103 164 aaKnown RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 ZNF616Q08AN1 781 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 TMEM267Q0VDI3 215 aaPredicted RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 ZNF273Q14593 569 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 LTC4SQ16873 150 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 RTL8BQ17RB0 113 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 TMEM249Q2WGJ8 235 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 RPL39P5Q59GN2 51 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 OR2B11Q5JQS5 317 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 PRAMEF5Q5TYX0 476 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 SLC25A24Q6NUK1 477 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 C1orf229Q6ZS94 237 aaPredicted RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 THNSL2Q86YJ6 484 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 TGIF2LYQ8IUE0 185 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 LYG1Q8N1E2 194 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 ZCCHC24Q8N2G6 241 aaKnown RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 LILRB2Q8N423 598 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 ZNF383Q8NA42 475 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 OR5AN1Q8NGI8 311 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 OR4A5Q8NH83 315 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 C8orf46Q8TAG6 207 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 LINC01560Q8TB33 94 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 FAM213BQ8TBF2 198 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 NEU4Q8WWR8 484 aaPredicted RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 ZCCHC14Q8WYQ9 949 aaKnown RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 RHOVQ96L33 236 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 CLCC1Q96S66 551 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 NKX6-2Q9C056 277 aaPredicted RBP6.24□□□□□ -1.41
COL6A3-208ENST00000468792 SLC35B3Q9H1N7 401 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 TMEM140Q9NV12 185 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 DCAF16Q9NXF7 216 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 BET1LQ9NYM9 111 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 PRNDQ9UKY0 176 aa6.24□□□□□ -1.41
COL6A3-208ENST00000468792 FAM90A27PA6NNH2 459 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 C15orf62A8K5M9 175 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 CEBPZOSA8MTT3 80 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 J3QR06 171 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 DNASE2O00115 360 aaPredicted RBP6.23□□□□□ -1.41
COL6A3-208ENST00000468792 DVL1O14640 695 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 SCO1O75880 301 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 MMP23AO75900 390 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 NXPH3O95157 252 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 GOSR1O95249 250 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 IFNA17P01571 189 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 IGHV2-70P01814 119 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 HSPB1P04792 205 aaKnown RBP6.23□□□□□ -1.41
COL6A3-208ENST00000468792 SFTA3P0C7M3 94 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 C1QTNF9P0C862 333 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 NFYBP25208 207 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 FHITP49789 147 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 DEFA5Q01523 94 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 TMEM177Q53S58 311 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 KHDC3LQ587J8 217 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 TMEM41BQ5BJD5 291 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 ZNF506Q5JVG8 444 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 C11orf71Q6IPW1 123 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 DTX2Q86UW9 622 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 PDPNQ86YL7 162 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 OR5B3Q8NH48 314 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 OR9G1Q8NH87 305 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 NEUROG1Q92886 237 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 ST6GALNAC6Q969X2 333 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 QTRT1Q9BXR0 403 aaKnown RBP6.23□□□□□ -1.41
COL6A3-208ENST00000468792 RAB1BQ9H0U4 201 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 TUBA4BQ9H853 241 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 CBLN4Q9NTU7 201 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 CTSZQ9UBR2 303 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 RALYQ9UKM9 306 aaKnown RBP6.23□□□□□ -1.41
COL6A3-208ENST00000468792 FBXO7Q9Y3I1 522 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 CHD8Q9HCK8 2581 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 NCOR2Q9Y618 2525 aa6.23□□□□□ -1.41
COL6A3-208ENST00000468792 RAI1Q7Z5J4 1906 aaPredicted RBP6.23□□□□□ -1.41
COL6A3-208ENST00000468792 RBFOX3A6NFN3 312 aa6.22□□□□□ -1.41
COL6A3-208ENST00000468792 C9JQL5 133 aa6.22□□□□□ -1.41
COL6A3-208ENST00000468792 PRSS46E5RG02 174 aa6.22□□□□□ -1.41
COL6A3-208ENST00000468792 C17orf112F2Z3M2 114 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms