RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 OR4S2Q8NH73 311 aa13.95□□□□□ -0.18
COL7A1-205ENST00000465238 TERB2Q8NHR7 220 aa13.95□□□□□ -0.18
COL7A1-205ENST00000465238 OSR1Q8TAX0 266 aaPredicted RBP13.95□□□□□ -0.18
COL7A1-205ENST00000465238 AP4M1O00189 453 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 SLC25A17O43808 307 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 PGLYRP1O75594 196 aaPredicted RBP13.94□□□□□ -0.18
COL7A1-205ENST00000465238 HLA-DRB1P01911 266 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 PGAM2P15259 253 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 IGLL1P15814 213 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 VMA21Q3ZAQ7 101 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 LHFPL1Q86WI0 220 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 SLC38A6Q8IZM9 456 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 SPAG16Q8N0X2 631 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 POC5Q8NA72 575 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 OR51H1Q8NH63 302 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 CLCC1Q96S66 551 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 HSPB9Q9BQS6 159 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 RSRP1Q9BUV0 290 aa13.94□□□□□ -0.18
COL7A1-205ENST00000465238 LINC01548A6NM66 108 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 PF4P02776 101 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 AP3S2P59780 193 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 PHLDA2Q53GA4 152 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 FAAP20Q6NZ36 180 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 TOMM5Q8N4H5 51 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 GDPD1Q8N9F7 314 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 OR4C16Q8NGL9 310 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 CHPT1Q8WUD6 406 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 NOL4LQ96MY1 436 aaPredicted RBP13.93□□□□□ -0.18
COL7A1-205ENST00000465238 SRRQ9GZT4 340 aa13.93□□□□□ -0.18
COL7A1-205ENST00000465238 SRRM4A7MD48 611 aaKnown RBP13.92□□□□□ -0.18
COL7A1-205ENST00000465238 IGLV2-23P01705 113 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 RLN1P04808 185 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 ZNF735P0CB33 412 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 FAUP35544 74 aaKnown RBP13.92□□□□□ -0.18
COL7A1-205ENST00000465238 PPP5CP53041 499 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 ZNF45Q02386 682 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 ZFAND1Q8TCF1 268 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 CD300LFQ8TDQ1 290 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 PRRT1Q99946 306 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 GON7Q9BXV9 100 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 OR51J1Q9H342 316 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 MCUBQ9NWR8 336 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 LINC00527Q9UJ94 153 aa13.92□□□□□ -0.18
COL7A1-205ENST00000465238 IGHV7-81A0A0B4J1V7 117 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 PSMB11A5LHX3 300 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 FCN1O00602 326 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 RBFOX2O43251 390 aaKnown RBP eCLIP13.91□□□□□ -0.18
COL7A1-205ENST00000465238 DUS4LO95620 317 aaKnown RBP13.91□□□□□ -0.18
COL7A1-205ENST00000465238 HRASP01112 189 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 ECI1P42126 302 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 INPP1P49441 399 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 BRWD1-AS2P59051 145 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 UBE2KP61086 200 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 SLC35B1P78383 322 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 CX3CL1P78423 397 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 PPP1R27Q86WC6 154 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 STPG2Q8N412 459 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 TEX45Q8NA69 505 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 ABHD5Q8WTS1 349 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 TRIM63Q969Q1 353 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 ZNF486Q96H40 463 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-205ENST00000465238 RCC1LQ96I51 464 aaKnown RBP13.91□□□□□ -0.18
COL7A1-205ENST00000465238 AIFM2Q9BRQ8 373 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 PARP11Q9NR21 331 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 SCP2D1Q9UJQ7 156 aa13.91□□□□□ -0.18
COL7A1-205ENST00000465238 RAMP3O60896 148 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 HPRT1P00492 218 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 CRYGBP07316 175 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 KLF9Q13886 244 aaPredicted RBP13.9□□□□□ -0.18
COL7A1-205ENST00000465238 KHDC1LQ5JSQ8 128 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 TRIQKQ629K1 86 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 ZNF57Q68EA5 555 aaPredicted RBP13.9□□□□□ -0.18
COL7A1-205ENST00000465238 ZNF562Q6V9R5 426 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 LINC00299Q6ZSB3 139 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 OR51S1Q8NGJ8 323 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 MARCH1Q8TCQ1 289 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 PTTG2Q9NZH5 202 aa13.9□□□□□ -0.18
COL7A1-205ENST00000465238 CNIH1O95406 144 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 CA2P00918 260 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 IGF1P05019 195 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 SAA1P0DJI8 122 aaPredicted RBP13.89□□□□□ -0.19
COL7A1-205ENST00000465238 VDAC1P21796 283 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 F2RP25116 425 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 GNB1P62873 340 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 C10orf99Q6UWK7 81 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 IDO2Q6ZQW0 420 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 TBC1D26Q86UD7 250 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 TCTEX1D1Q8N7M0 179 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 VSTM2AQ8TAG5 236 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 DEDD2Q8WXF8 326 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 SLC2A9Q9NRM0 540 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 TPSG1Q9NRR2 321 aa13.89□□□□□ -0.19
COL7A1-205ENST00000465238 C14orf166Q9Y224 244 aaKnown RBP13.89□□□□□ -0.19
COL7A1-205ENST00000465238 ATP6V0E1O15342 81 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 CREBL2O60519 120 aaPredicted RBP13.88□□□□□ -0.19
COL7A1-205ENST00000465238 PI3P19957 117 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 TAS2R31P59538 309 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 RND3P61587 244 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 PJVKQ0ZLH3 352 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 FXYD3Q14802 87 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms