RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SLC37A2Q8TED4 501 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 KCTD7Q96MP8 289 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 TIPINQ9BVW5 301 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 VCX3BQ9H321 246 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 C8orf4Q9NR00 106 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 ATP6V1DQ9Y5K8 247 aa1.09□□□□□ -2.23
USP40-209ENST00000452724 DISP1Q96F81 1524 aa1.09□□□□□ -2.24
USP40-209ENST00000452724 RTTNQ86VV8 2226 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 THSD7AQ9UPZ6 1657 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 A0A087WUU8 490 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 F5H768 121 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 PGLYRP1O75594 196 aaPredicted RBP1.08□□□□□ -2.24
USP40-209ENST00000452724 APOEP02649 317 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 IL6P05231 212 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 IL3P08700 152 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 OCM2P0CE71 109 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 MAGEA2P43356 314 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 TBPL1P62380 186 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 PLPPR5Q32ZL2 321 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 TMEM42Q69YG0 159 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 OR51T1Q8NGJ9 327 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 RNF133Q8WVZ7 376 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 C12orf43Q96C57 262 aaKnown RBP1.08□□□□□ -2.24
USP40-209ENST00000452724 NMNAT3Q96T66 252 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 HSPB9Q9BQS6 159 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 TMEM109Q9BVC6 243 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 UPF3BQ9BZI7 483 aaKnown RBP1.08□□□□□ -2.24
USP40-209ENST00000452724 ZNHIT6Q9NWK9 470 aaKnown RBP1.08□□□□□ -2.24
USP40-209ENST00000452724 USE1Q9NZ43 259 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 CHD5Q8TDI0 1954 aa1.08□□□□□ -2.24
USP40-209ENST00000452724 PFDN6O15212 129 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 SLC16A4O15374 487 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 COCHO43405 550 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 KLRC4O43908 158 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 KRT75O95678 551 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 HLA-DQB2P05538 268 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 CDC34P49427 236 aaPredicted RBP1.07□□□□□ -2.24
USP40-209ENST00000452724 KRTAP10-4P60372 401 aaPredicted RBP1.07□□□□□ -2.24
USP40-209ENST00000452724 CXCR4P61073 352 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 FKBP1AP62942 108 aaKnown RBP1.07□□□□□ -2.24
USP40-209ENST00000452724 HLA-DRB3P79483 266 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 TMEM155Q4W5P6 130 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 ZNF675Q8TD23 568 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 LLPHQ9BRT6 129 aaKnown RBP1.07□□□□□ -2.24
USP40-209ENST00000452724 TTTY13Q9BZ97 58 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 DERL2Q9GZP9 239 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 DRC3Q9H069 523 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 CYSTM1Q9H1C7 97 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 NKIRAS1Q9NYS0 192 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 POLR1DQ9Y2S0 133 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 C15orf41Q9Y2V0 281 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 ABCC11Q96J66 1382 aa1.07□□□□□ -2.24
USP40-209ENST00000452724 CUL9Q8IWT3 2517 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 TMED7-TICAM2A0A0A6YYA0 188 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 C9JCJ5 164 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 ZNF737O75373 536 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 DEXIO95424 95 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 APOMO95445 188 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 HLA-DRAP01903 254 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 FXYD7P58549 80 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 TAS2R20P59543 309 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 JOSD1Q15040 202 aaPredicted RBP1.06□□□□□ -2.24
USP40-209ENST00000452724 MIAQ16674 131 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 FAM78BQ5VT40 261 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 CST9Q5W186 159 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 LYZL1Q6UWQ5 148 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 LRRN1Q6UXK5 716 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 TMEM156Q8N614 296 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 OR1L8Q8NGR8 309 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 PIGXQ8TBF5 258 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 C10orf105Q8TEF2 133 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 DOHHQ9BU89 302 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 CCDC88CQ9P219 2028 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 NUMA1Q14980 2115 aa1.06□□□□□ -2.24
USP40-209ENST00000452724 CA5AP35218 305 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 MAGOHP61326 146 aaKnown RBP1.05□□□□□ -2.24
USP40-209ENST00000452724 MLLT11Q13015 90 aaPredicted RBP1.05□□□□□ -2.24
USP40-209ENST00000452724 COTL1Q14019 142 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 BATFQ16520 125 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 OGFRL1Q5TC84 451 aaPredicted RBP1.05□□□□□ -2.24
USP40-209ENST00000452724 ZNF705AQ6ZN79 300 aaPredicted RBP1.05□□□□□ -2.24
USP40-209ENST00000452724 KTN1-AS1Q86SY8 53 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 NAA40Q86UY6 237 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 GPHB5Q86YW7 130 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 SLC7A6Q92536 515 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 TMA16Q96EY4 203 aaKnown RBP1.05□□□□□ -2.24
USP40-209ENST00000452724 ANKRD36BP1Q96IX9 119 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 MAP1LC3AQ9H492 121 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 FGFR1OP2Q9NVK5 253 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 DKKL1Q9UK85 242 aa1.05□□□□□ -2.24
USP40-209ENST00000452724 ZFHX2Q9C0A1 2572 aaPredicted RBP1.04□□□□□ -2.24
USP40-209ENST00000452724 MEIKINA0A087WXM9 373 aa1.04□□□□□ -2.24
USP40-209ENST00000452724 IGKV1D-43A0A0B4J1Z2 117 aa1.04□□□□□ -2.24
USP40-209ENST00000452724 TRBV6-5A0A0K0K1A5 114 aa1.04□□□□□ -2.24
USP40-209ENST00000452724 DISC1C4P0D8 188 aa1.04□□□□□ -2.24
USP40-209ENST00000452724 LRRN3E7EW58 273 aa1.04□□□□□ -2.24
USP40-209ENST00000452724 M0QZ92 97 aa1.04□□□□□ -2.24
USP40-209ENST00000452724 CXCR6O00574 342 aa1.04□□□□□ -2.24
USP40-209ENST00000452724 TYMSP04818 313 aa1.04□□□□□ -2.24
USP40-209ENST00000452724 KRT7P08729 469 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms