RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 COX5AP20674 150 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 TLE1Q04724 770 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 OR51G1Q8NGK1 321 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 RPUSD4Q96CM3 377 aaKnown RBP11.89□□□□□ -0.51
LIG1-202ENST00000427526 HSD17B10Q99714 261 aaKnown RBP11.89□□□□□ -0.51
LIG1-202ENST00000427526 ACTR3CQ9C0K3 210 aaPredicted RBP11.89□□□□□ -0.51
LIG1-202ENST00000427526 SRD5A3Q9H8P0 318 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 C15orf65H3BRN8 121 aa11.88□□□□□ -0.51
LIG1-202ENST00000427526 RPS16P62249 146 aaKnown RBP11.88□□□□□ -0.51
LIG1-202ENST00000427526 PAX5Q02548 391 aa11.88□□□□□ -0.51
LIG1-202ENST00000427526 IGFL3Q6UXB1 125 aa11.88□□□□□ -0.51
LIG1-202ENST00000427526 OR4X1Q8NH49 305 aa11.88□□□□□ -0.51
LIG1-202ENST00000427526 PRR14LQ5THK1 2151 aa11.88□□□□□ -0.51
LIG1-202ENST00000427526 DCHS1Q96JQ0 3298 aa11.88□□□□□ -0.51
LIG1-202ENST00000427526 IGHV3-43A0A0B4J1X8 118 aa11.88□□□□□ -0.51
LIG1-202ENST00000427526 IGHV3-43DP0DP04 118 aa11.88□□□□□ -0.51
LIG1-202ENST00000427526 PROP1O75360 226 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 HIST1H1BP16401 226 aaKnown RBP11.87□□□□□ -0.51
LIG1-202ENST00000427526 HTD2P86397 168 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 SEM1Q6ZVN7 128 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 RFESDQ8TAC1 157 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 DIRC2Q96SL1 478 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 MSL2Q9HCI7 577 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 PITPNC1Q9UKF7 332 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 PSG11Q9UQ72 335 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 CACNA1DQ01668 2161 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 C15orf62A8K5M9 175 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 DEFB108AA8MXU0 73 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 AHRRA9YTQ3 701 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 GZMHP20718 246 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 TUBG1P23258 451 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 SPINK9Q5DT21 86 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 DNLZQ5SXM8 178 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 CD177Q8N6Q3 437 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 C1orf162Q8NEQ5 155 aaPredicted RBP11.87□□□□□ -0.51
LIG1-202ENST00000427526 OR4F5Q8NH21 305 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 OR4F4Q96R69 305 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 TUBG2Q9NRH3 451 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 FZR1Q9UM11 496 aa11.87□□□□□ -0.51
LIG1-202ENST00000427526 TIMM8AO60220 97 aaPredicted RBP11.86□□□□□ -0.51
LIG1-202ENST00000427526 TNFSF13O75888 250 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 CECR9P0C854 216 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 FABP4P15090 132 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 USF2Q15853 346 aaPredicted RBP11.86□□□□□ -0.51
LIG1-202ENST00000427526 MAJINQ3KP22 176 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 Q6ZS92 163 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 RBMXL3Q8N7X1 1067 aaKnown RBP11.86□□□□□ -0.51
LIG1-202ENST00000427526 SNX22Q96L94 193 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 DCTN5Q9BTE1 182 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 QTRT1Q9BXR0 403 aaKnown RBP11.86□□□□□ -0.51
LIG1-202ENST00000427526 DOCK11Q5JSL3 2073 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 TMEM238LA0A1B0GVL6 79 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 TMEM11P17152 192 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 FABP6P51161 128 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 SMIM21Q3B7S5 101 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 TGIF2LYQ8IUE0 185 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 RPRMLQ8N4K4 120 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 ZNF709Q8N972 641 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 HIST1H2BLQ99880 126 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 PRO1933Q9H354 126 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 PAGE4O60829 102 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 RBMXL2O75526 392 aaKnown RBP11.86□□□□□ -0.51
LIG1-202ENST00000427526 ADH4P08319 380 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 OR9G9P0C7N8 305 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 DEFA4P12838 97 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 NPPCP23582 126 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 PKIAP61925 76 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 STARD4Q96DR4 205 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 PLSCR4Q9NRQ2 329 aa11.86□□□□□ -0.51
LIG1-202ENST00000427526 CACNA1GO43497 2377 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 C17orf112F2Z3M2 114 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 IGLV1-44P01699 117 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 DUTP33316 252 aaKnown RBP11.85□□□□□ -0.51
LIG1-202ENST00000427526 GALR1P47211 349 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 MBNL2Q5VZF2 373 aaKnown RBP11.85□□□□□ -0.51
LIG1-202ENST00000427526 NECAP1Q8NC96 275 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 WDR83OSQ9Y284 106 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 DMXL2Q8TDJ6 3036 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 SPINT2O43291 252 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 HOXC12P31275 282 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 R3HDM4Q96D70 268 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 ATG101Q9BSB4 218 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 OR6C3Q9NZP0 311 aa11.85□□□□□ -0.51
LIG1-202ENST00000427526 H7BYZ3 331 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 PRDX2P32119 198 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 FOXC1Q12948 553 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 TMEM249Q2WGJ8 235 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 ZNF718Q3SXZ3 478 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 TRAT1Q6PIZ9 186 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 TMEM183AQ8IXX5 376 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 ANAPC16Q96DE5 110 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 NEIL1Q96FI4 390 aaPredicted RBP11.84□□□□□ -0.51
LIG1-202ENST00000427526 SMCO3A2RU48 225 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 VENTXO95231 258 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 CGAP01215 116 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 CD1BP29016 333 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 ACOT6Q3I5F7 207 aaPredicted RBP11.84□□□□□ -0.51
LIG1-202ENST00000427526 SAPCD1Q5SSQ6 148 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 FAM90A1Q86YD7 464 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 PACRGQ96M98 296 aaPredicted RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms