RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 Q6ZRG5 221 aa10.96□□□□□ -0.65
LIMS1-204ENST00000409441 UBALD1Q8TB05 177 aa10.96□□□□□ -0.65
LIMS1-204ENST00000409441 ZNF714Q96N38 554 aa10.96□□□□□ -0.65
LIMS1-204ENST00000409441 MAGT1Q9H0U3 335 aa10.96□□□□□ -0.65
LIMS1-204ENST00000409441 HRH4Q9H3N8 390 aa10.96□□□□□ -0.65
LIMS1-204ENST00000409441 COA4Q9NYJ1 87 aa10.96□□□□□ -0.65
LIMS1-204ENST00000409441 ONECUT1Q9UBC0 465 aa10.96□□□□□ -0.65
LIMS1-204ENST00000409441 ZANQ9Y493 2812 aa10.96□□□□□ -0.66
LIMS1-204ENST00000409441 C15orf65H3BRN8 121 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 IGKV1-5P01602 117 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 ZNF16P17020 682 aaPredicted RBP10.95□□□□□ -0.66
LIMS1-204ENST00000409441 GATA3P23771 443 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 AKR1C2P52895 323 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 ERVFRD-1P60508 538 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 ZNF66Q6ZN08 573 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 C11orf42Q8N5U0 333 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 OR52L2PQ8NGH6 319 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 TSNAXQ99598 290 aaKnown RBP10.95□□□□□ -0.66
LIMS1-204ENST00000409441 SMR3AQ99954 134 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 OR2D2Q9H210 308 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 CACNG5Q9UF02 275 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 CACFD1Q9UGQ2 172 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 CARHSP1Q9Y2V2 147 aaKnown RBP10.95□□□□□ -0.66
LIMS1-204ENST00000409441 WSB1Q9Y6I7 421 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 ABCA2Q9BZC7 2435 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 CSPG4Q6UVK1 2322 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 KBTBD11-OT1A0A1B0GTJ5 212 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 ZNF729A6NN14 1252 aaPredicted RBP10.95□□□□□ -0.66
LIMS1-204ENST00000409441 CD5LO43866 347 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 DFFBO76075 338 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 EPHA1P21709 976 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 PAX9P55771 341 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 DLX6P56179 175 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 TAS2R30P59541 319 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 KRTAP1-1Q07627 177 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 C17orf58Q2M2W7 97 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 C1orf122Q6ZSJ8 110 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 STX12Q86Y82 276 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 RFESDQ8TAC1 157 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 EDARADDQ8WWZ3 215 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 GAL3ST2Q9H3Q3 398 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 C7orf69Q9H7B7 122 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 RAB9BQ9NP90 201 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 TREM1Q9NP99 234 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 UQCC1Q9NVA1 299 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 MMP24Q9Y5R2 645 aa10.95□□□□□ -0.66
LIMS1-204ENST00000409441 ABCA1O95477 2261 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 hCG_1809904A0A1W2PP81 198 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 A0A1W2PPE2 198 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 A0A1W2PR64 198 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 A0A1W2PRV1 198 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 C17orf98A8MV24 154 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 UMAD1C9J7I0 102 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 M0R1W7 72 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 TOR1AO14656 332 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 TXNL1O43396 289 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 SYNGR2O43760 224 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 TMEM50AO95807 157 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 CAMLGP49069 296 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 DYNLT3P51808 116 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 DEFA5Q01523 94 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 ODF3L1Q8IXM7 274 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 SVBPQ8N300 66 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 KIR3DL3Q8N743 410 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 Q8N7P7 452 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 OR5C1Q8NGR4 320 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 GNPNAT1Q96EK6 184 aaPredicted RBP10.94□□□□□ -0.66
LIMS1-204ENST00000409441 HSD17B10Q99714 261 aaKnown RBP10.94□□□□□ -0.66
LIMS1-204ENST00000409441 SEC11CQ9BY50 192 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 MS4A7Q9GZW8 240 aaPredicted RBP10.94□□□□□ -0.66
LIMS1-204ENST00000409441 LINC00574Q9H8X3 128 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 CALYQ9NYX4 217 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 JPT1Q9UK76 154 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 KPTNQ9Y664 436 aa10.94□□□□□ -0.66
LIMS1-204ENST00000409441 J3QLI3 93 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 TOX4O94842 621 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 LY6G6DO95868 133 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 OMGP23515 440 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 SSTR5P35346 364 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 PPP1CCP36873 323 aaKnown RBP10.93□□□□□ -0.66
LIMS1-204ENST00000409441 SULT1A1P50225 295 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 BTN1A1Q13410 526 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 Q6ZRM9 215 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 HSD17B11Q8NBQ5 300 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 C17orf50Q8WW18 174 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 ATP5SQ99766 215 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 NKX6-2Q9C056 277 aaPredicted RBP10.93□□□□□ -0.66
LIMS1-204ENST00000409441 SIRPDQ9H106 197 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 HIVEP1P15822 2718 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 MAST4O15021 2626 aa10.93□□□□□ -0.66
LIMS1-204ENST00000409441 CELSR1Q9NYQ6 3014 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 F8W036 122 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 RNASEK-C17orf49H0YIS7 233 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 ITGB1BP1O14713 200 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 YPEL1O60688 119 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 MMP23AO75900 390 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 TSPAN15O95858 294 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 CD5P06127 495 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 P0C879 139 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 CLINT1Q14677 625 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms