RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 Q6ZSV7 163 aa12.65□□□□□ -0.38
HMGA1-204ENST00000401473 SLC25A42Q86VD7 318 aa12.65□□□□□ -0.38
HMGA1-204ENST00000401473 CENPSQ8N2Z9 138 aa12.65□□□□□ -0.38
HMGA1-204ENST00000401473 DUSP18Q8NEJ0 188 aa12.65□□□□□ -0.38
HMGA1-204ENST00000401473 MDFIQ99750 246 aa12.65□□□□□ -0.38
HMGA1-204ENST00000401473 PLEKHA2Q9HB19 425 aa12.65□□□□□ -0.38
HMGA1-204ENST00000401473 TRAV6A0A075B6T7 132 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 LINC01548A6NM66 108 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 H0Y980 276 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 ARPC1BO15143 372 aaKnown RBP12.64□□□□□ -0.39
HMGA1-204ENST00000401473 ANXA7P20073 488 aaKnown RBP12.64□□□□□ -0.39
HMGA1-204ENST00000401473 PJVKQ0ZLH3 352 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 CBX3Q13185 183 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 TCTEX1D1Q8N7M0 179 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 RHOVQ96L33 236 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 C20orf85Q9H1P6 137 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 NUDT15Q9NV35 164 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 PRR13Q9NZ81 148 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 SIGLEC9Q9Y336 463 aa12.64□□□□□ -0.39
HMGA1-204ENST00000401473 CRYBA1P05813 215 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 SAA1P0DJI8 122 aaPredicted RBP12.63□□□□□ -0.39
HMGA1-204ENST00000401473 RPA2P15927 270 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 RPL15P61313 204 aaKnown RBP12.63□□□□□ -0.39
HMGA1-204ENST00000401473 SSX9Q7RTT3 188 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 SGPP2Q8IWX5 399 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 GALNT14Q96FL9 552 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 TSNAXQ99598 290 aaKnown RBP12.63□□□□□ -0.39
HMGA1-204ENST00000401473 FAM212BQ9NTI7 297 aaPredicted RBP12.63□□□□□ -0.39
HMGA1-204ENST00000401473 METTL1Q9UBP6 276 aaKnown RBP12.63□□□□□ -0.39
HMGA1-204ENST00000401473 M0QZK8 103 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 TSPAN9O75954 239 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 KRASP01116 189 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 UCP1P25874 307 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 DEFA1P59665 94 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 DEFA3P59666 94 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 PPP1R1AQ13522 171 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 LIN54Q6MZP7 749 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 LHFPL5Q8TAF8 219 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 HSPB9Q9BQS6 159 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 NPFFR1Q9GZQ6 430 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 TMEM222Q9H0R3 208 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 ZNF702PQ9H963 129 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 BEX1Q9HBH7 125 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 KIAA1456Q9P272 454 aa12.63□□□□□ -0.39
HMGA1-204ENST00000401473 TET2Q6N021 2002 aaPredicted RBP12.63□□□□□ -0.39
HMGA1-204ENST00000401473 DNHD1Q96M86 4753 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 CDS2O95674 445 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 SERPINE2P07093 398 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 NQO2P16083 231 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 G6PCP35575 357 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 TAS2R31P59538 309 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 UBE2KP61086 200 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 TMEM187Q14656 261 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 PPP1R27Q86WC6 154 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 SEC22AQ96IW7 307 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 CLCC1Q96S66 551 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 RASL11BQ9BPW5 248 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 C19orf24Q9BVV8 132 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 PALMDQ9NP74 551 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 KCNIP3Q9Y2W7 256 aa12.62□□□□□ -0.39
HMGA1-204ENST00000401473 MARCH11A6NNE9 402 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 SPDEFO95238 335 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 HRASP01112 189 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 IL6RP08887 468 aaPredicted RBP12.61□□□□□ -0.39
HMGA1-204ENST00000401473 OR4E1P0C645 316 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 SPNP16150 400 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 RAB25P57735 213 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 SSBP2P81877 361 aaPredicted RBP12.61□□□□□ -0.39
HMGA1-204ENST00000401473 DCTN2Q13561 401 aaKnown RBP12.61□□□□□ -0.39
HMGA1-204ENST00000401473 POU2AF1Q16633 256 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 PUSL1Q8N0Z8 303 aaKnown RBP12.61□□□□□ -0.39
HMGA1-204ENST00000401473 Q8N2B8 174 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 TEX45Q8NA69 505 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 ENKURQ8TC29 256 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 R3HDM4Q96D70 268 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 TRAV3A0A0B4J244 114 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 PLGLAQ15195 96 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 TMEM95Q3KNT9 176 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 OR4A47Q6IF82 309 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 LINC01006Q8NI28 216 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 TMEM158Q8WZ71 300 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 PRSS22Q9GZN4 317 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 ALX4Q9H161 411 aaPredicted RBP12.61□□□□□ -0.39
HMGA1-204ENST00000401473 COMMD9Q9P000 198 aa12.61□□□□□ -0.39
HMGA1-204ENST00000401473 IGHV7-81A0A0B4J1V7 117 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 C9orf170A2RU37 121 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 B3GALNT1O75752 331 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 OR2A4O95047 310 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 IGHG2P01859 326 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 HLA-DRB1P01911 266 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 H2AFB2P0C5Z0 115 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 HKR1P10072 659 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 VAMP1P23763 118 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 MECP2P51608 486 aaKnown RBP12.6□□□□□ -0.39
HMGA1-204ENST00000401473 CX3CL1P78423 397 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 TRIM16LQ309B1 348 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 KRTAP21-3Q3LHN1 58 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 VMA21Q3ZAQ7 101 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 C9orf152Q5JTZ5 239 aa12.6□□□□□ -0.39
HMGA1-204ENST00000401473 TMEM56Q96MV1 263 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms