RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 IGKV1-33P01594 117 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 FCGR2BP31994 310 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-202ENST00000394943 F2RL1P55085 397 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 KRTAP24-1Q3LI83 254 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 CMTM1Q8IZ96 169 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 SELENOHQ8IZQ5 122 aaKnown RBP5.53□□□□□ -1.52
LIMA1-202ENST00000394943 TTC9CQ8N5M4 171 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 FLYWCH2Q96CP2 140 aaKnown RBP5.53□□□□□ -1.52
LIMA1-202ENST00000394943 A0A1W2PPE3 182 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 M0R1X1 148 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 CREBL2O60519 120 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-202ENST00000394943 PRAF2O60831 178 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 TMEM11P17152 192 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 PRSS8Q16651 343 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 AKIRIN2Q53H80 203 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 ASPHD1Q5U4P2 390 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 SGMS2Q8NHU3 365 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 MITD1Q8WV92 249 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 TP53RKQ96S44 253 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 FAM96BQ9Y3D0 163 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 HSPA12AO43301 675 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 DUS4LO95620 317 aaKnown RBP5.53□□□□□ -1.52
LIMA1-202ENST00000394943 IGKV1-5P01602 117 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 IGHG4P01861 327 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 TRIQKQ629K1 86 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 HSD17B13Q7Z5P4 300 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-202ENST00000394943 UBALD1Q8TB05 177 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 MARCH1Q8TCQ1 289 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 ASB13Q8WXK3 278 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 NPFFR1Q9GZQ6 430 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 NF1P21359 2839 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 A0A1B0GW64 132 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 FAM90A26D6RGX4 464 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 HRASP01112 189 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 TCRBP04435 133 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 NQO2P16083 231 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 OXA1LQ15070 435 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 NDUFA4L2Q9NRX3 87 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 HILPDAQ9Y5L2 63 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 FN1P02751 2386 aaKnown RBP5.52□□□□□ -1.53
LIMA1-202ENST00000394943 CLPSL1A2RUU4 121 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 C15orf61A6NNL5 157 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 ADARB2-AS1A8MUL3 147 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 RAMP3O60896 148 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 LY86O95711 162 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 HLA-AP01891 365 aaKnown RBP5.52□□□□□ -1.53
LIMA1-202ENST00000394943 IFNA6P05013 189 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 ATP5IP56385 69 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-202ENST00000394943 PIGPP57054 158 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 FOXL1Q12952 345 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 GLDNQ6ZMI3 551 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-202ENST00000394943 LYG2Q86SG7 212 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 ADAD2Q8NCV1 583 aaKnown RBP5.52□□□□□ -1.53
LIMA1-202ENST00000394943 SPATA3Q8NHX4 192 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 LINC01006Q8NI28 216 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 LHFPL5Q8TAF8 219 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 PRSS22Q9GZN4 317 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 C20orf85Q9H1P6 137 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 OR51J1Q9H342 316 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 C9orf170A2RU37 121 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 ATG12O94817 140 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 OR2A4O95047 310 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 SAA1P0DJI8 122 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-202ENST00000394943 PSMB8P28062 276 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 KRTAP10-3P60369 221 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 OR4F5Q8NH21 305 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 CHPT1Q8WUD6 406 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 OR2A7Q96R45 310 aa5.52□□□□□ -1.53
LIMA1-202ENST00000394943 IGHV3OR16-10A0A075B7F0 116 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 CENPXA8MT69 81 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 OR2B8PP59922 312 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 FOXE3Q13461 319 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 MZT2BQ6NZ67 158 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 PPP1R27Q86WC6 154 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 MMD2Q8IY49 270 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 SECTM1Q8WVN6 248 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 ZNF414Q96IQ9 312 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 MAST4O15021 2626 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 S100GP29377 79 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 PRB3Q04118 309 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-202ENST00000394943 LTC4SQ16873 150 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 OR5B3Q8NH48 314 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 FAM110DQ8TAY7 271 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-202ENST00000394943 TMEM158Q8WZ71 300 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 RBPMSQ93062 196 aaKnown RBP5.51□□□□□ -1.53
LIMA1-202ENST00000394943 ZDHHC16Q969W1 377 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 FKBP11Q9NYL4 201 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 C14orf166Q9Y224 244 aaKnown RBP5.51□□□□□ -1.53
LIMA1-202ENST00000394943 A0A1B0GU03 582 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 BTBD17A6NE02 478 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 S1PR2O95136 353 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 LYL1P12980 280 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 CNTFRP26992 372 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 CBX3Q13185 183 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 VMA21Q3ZAQ7 101 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 FAM209BQ5JX69 171 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 OR4A47Q6IF82 309 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 FAAP20Q6NZ36 180 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 MOB3BQ86TA1 216 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 OR4D5Q8NGN0 318 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms