RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 FGF8P55075 233 aaPredicted RBP12.36□□□□□ -0.43
GPC3-202ENST00000394299 PEA15Q15121 130 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 ZNF726P1Q15940 193 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 SP5Q6BEB4 398 aaPredicted RBP12.36□□□□□ -0.43
GPC3-202ENST00000394299 ST6GALNAC3Q8NDV1 305 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 C20orf24Q9BUV8 137 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 TMEM140Q9NV12 185 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 LAMP3Q9UQV4 416 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 TNFRSF13BO14836 293 aaPredicted RBP12.36□□□□□ -0.43
GPC3-202ENST00000394299 PPIHO43447 177 aaKnown RBP12.36□□□□□ -0.43
GPC3-202ENST00000394299 CHRNB4P30926 498 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 RAB7AP51149 207 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 DLX1P56177 255 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 RELBQ01201 579 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 PRB3Q04118 309 aaPredicted RBP12.36□□□□□ -0.43
GPC3-202ENST00000394299 LCN15Q6UWW0 184 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 OR4A16Q8NH70 328 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 TAF15Q92804 592 aaKnown RBP eCLIP12.36□□□□□ -0.431e-6■■□□□ 11.6
GPC3-202ENST00000394299 TET2Q6N021 2002 aaPredicted RBP12.36□□□□□ -0.43
GPC3-202ENST00000394299 DVL1O14640 695 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 SNAPINO95295 136 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 IGKV1-16P04430 117 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 COL8A2P25067 703 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 TFF3Q07654 80 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 C1orf87Q8N0U7 546 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 COMMD1Q8N668 190 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 MS4A5Q9H3V2 200 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 NDRG3Q9UGV2 375 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 LINC00312Q9Y6C7 94 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 PCP4L1A6NKN8 68 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 C15orf62A8K5M9 175 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 IGKV1D-33P01593 117 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 IGKV1-33P01594 117 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 CT45A6P0DMU7 189 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 CT45A5P0DMU8 189 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 CT45A7P0DMV0 189 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 NQO2P16083 231 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 REG1BP48304 166 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 CEBPGP53567 150 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 DIAPH2-AS1Q14236 149 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 ABHD12Q8N2K0 398 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 CLRN3Q8NCR9 226 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 RHOVQ96L33 236 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 LINC00574Q9H8X3 128 aa12.35□□□□□ -0.43
GPC3-202ENST00000394299 HRNRQ86YZ3 2850 aaPredicted RBP12.34□□□□□ -0.43
GPC3-202ENST00000394299 SPTBN1Q01082 2364 aaKnown RBP12.34□□□□□ -0.43
GPC3-202ENST00000394299 RBFOX3A6NFN3 312 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 HMGB3O15347 200 aaKnown RBP12.34□□□□□ -0.43
GPC3-202ENST00000394299 LY6HO94772 140 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 SLC25A48Q6ZT89 311 aaKnown RBP12.34□□□□□ -0.43
GPC3-202ENST00000394299 OR10P1Q8NGE3 313 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 IGHV1-69-2A0A0G2JMI3 117 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 SRRM4A7MD48 611 aaKnown RBP12.34□□□□□ -0.43
GPC3-202ENST00000394299 ITGB1BP1O14713 200 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 RRHO14718 337 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 OPN1MWP04001 364 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 OPN1MW2P0DN77 364 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 OPN1MW3P0DN78 364 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 DEFA4P12838 97 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 DAOP14920 347 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 ERVK-16P61578 105 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 GAB2Q9UQC2 676 aa12.34□□□□□ -0.43
GPC3-202ENST00000394299 TNCP24821 2201 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 RBFOX2O43251 390 aaKnown RBP eCLIP12.33□□□□□ -0.444e-7■■■■□ 23.1
GPC3-202ENST00000394299 NDUFB3O43676 98 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 RAB2AP61019 212 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 OR4A47Q6IF82 309 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 SSX8Q7RTT4 187 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 MUC15Q8N387 334 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 OR4S2Q8NH73 311 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 RXFP4Q8TDU9 374 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 CA5BP1Q8WTZ4 195 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 ZNF714Q96N38 554 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 ASH1LQ9NR48 2969 aaKnown RBP12.33□□□□□ -0.44
GPC3-202ENST00000394299 B9A039 149 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 NDUFA2O43678 99 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 IFNA10P01566 189 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 TLE4Q04727 773 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 ACSM6Q6P461 480 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 TMEM170AQ8WVE7 144 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 PBDC1Q9BVG4 233 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 SLC35B3Q9H1N7 401 aa12.33□□□□□ -0.44
GPC3-202ENST00000394299 HEYLQ9NQ87 328 aaPredicted RBP12.33□□□□□ -0.44
GPC3-202ENST00000394299 SVEP1Q4LDE5 3571 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 FGF7P21781 194 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 LOXP28300 417 aaPredicted RBP12.32□□□□□ -0.44
GPC3-202ENST00000394299 THBS3P49746 956 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 RPP25LQ8N5L8 163 aaKnown RBP12.32□□□□□ -0.44
GPC3-202ENST00000394299 RCC1LQ96I51 464 aaKnown RBP12.32□□□□□ -0.44
GPC3-202ENST00000394299 RAB9BQ9NP90 201 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 KPTNQ9Y664 436 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 COL12A1Q99715 3063 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 SNRNP70P08621 437 aaKnown RBP12.32□□□□□ -0.44
GPC3-202ENST00000394299 VDAC2P45880 294 aaPredicted RBP12.32□□□□□ -0.44
GPC3-202ENST00000394299 SPCS3P61009 180 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 ICAM4Q14773 271 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 FBXL19-AS1Q494R0 122 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 LRRC10Q5BKY1 277 aa12.32□□□□□ -0.44
GPC3-202ENST00000394299 DHRS7BQ6IAN0 325 aaPredicted RBP12.32□□□□□ -0.44
GPC3-202ENST00000394299 LFNGQ8NES3 379 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms