RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 RNF224P0DH78 156 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 GPR12P47775 334 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 ATP5G3P48201 142 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 CEBPDP49716 269 aaPredicted RBP8.31□□□□□ -1.08
COL17A1-203ENST00000393211 NUTF2P61970 127 aaKnown RBP8.31□□□□□ -1.08
COL17A1-203ENST00000393211 RPL19P84098 196 aaKnown RBP8.31□□□□□ -1.08
COL17A1-203ENST00000393211 USF2Q15853 346 aaPredicted RBP8.31□□□□□ -1.08
COL17A1-203ENST00000393211 PRAMEF5Q5TYX0 476 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 PRAMEF6Q5VXH4 476 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 KIR2DL5AQ8N109 375 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 TMEM178AQ8NBL3 297 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 OR10G8Q8NGN5 311 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 OR13A1Q8NGR1 328 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 SGMS2Q8NHU3 365 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 PPP1R35Q8TAP8 253 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 C11orf52Q96A22 123 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 YPEL2Q96QA6 119 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 NCOR1P1Q9H4R4 102 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 NPVFQ9HCQ7 196 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 RAB9BQ9NP90 201 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 FOXJ2Q9P0K8 574 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 NAGKQ9UJ70 344 aa8.31□□□□□ -1.08
COL17A1-203ENST00000393211 TRBV9A0A0B4J1U6 114 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 TRAV38-1A0A0B4J264 116 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 A8MXE2 369 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 M0QZK8 103 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 WNT9BO14905 357 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 AREGP15514 252 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 TIMP3P35625 211 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 MPV17P39210 176 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 EDDM3BP56851 147 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 RHOBP62745 196 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 CLEC12BQ2HXU8 276 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 ZNF718Q3SXZ3 478 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 COX19Q49B96 90 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 TEX38Q6PEX7 206 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 TMEM105Q8N8V8 129 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 CORO2AQ92828 525 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 UHRF2Q96PU4 802 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 NEU1Q99519 415 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 MGST2Q99735 147 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 SFXN3Q9BWM7 321 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 GGTLC1Q9BX51 225 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 DEFB127Q9H1M4 99 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 HEYLQ9NQ87 328 aaPredicted RBP8.3□□□□□ -1.08
COL17A1-203ENST00000393211 IL36BQ9NZH7 164 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 SPRR3Q9UBC9 169 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 CLCF1Q9UBD9 225 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 LSM4Q9Y4Z0 139 aaKnown RBP8.3□□□□□ -1.08
COL17A1-203ENST00000393211 LAMA1P25391 3075 aa8.3□□□□□ -1.08
COL17A1-203ENST00000393211 TRGV10A0A0A0MS01 117 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 M0R143 59 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 F2RL2O00254 374 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 GFRA3O60609 400 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 FCGR3BO75015 233 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 SCGB1D1O95968 90 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 CRYAAP02489 173 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 C1QTNF9P0C862 333 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 ARL14EPLP0DKL9 152 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 HOXC12P31275 282 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 SSTR5P35346 364 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 CFHR2P36980 270 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 TPPP2P59282 170 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 UBE2G2P60604 165 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 RANP62826 216 aaKnown RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 RELBQ01201 579 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 RAB31Q13636 194 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 GUSBP1Q15486 140 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 MORN2Q502X0 79 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 MBNL2Q5VZF2 373 aaKnown RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 Q6ZR03 302 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 FAM214BQ7L5A3 538 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 C1orf210Q8IVY1 113 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 OR5T1Q8NG75 326 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 MS4A10Q96PG2 267 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 PTPRBP23467 1997 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 TRIOO75962 3097 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 MGST3O14880 152 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 TCAPO15273 167 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 TIMM8AO60220 97 aaPredicted RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 OR4A8P0C604 315 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 GCHFRP30047 84 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 PRDX2P32119 198 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 RPL29P47914 159 aaKnown RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 RAB7AP51149 207 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 ATP5IP56385 69 aaPredicted RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 ZNF826PQ6ZT77 177 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 DMRTC2Q8IXT2 367 aaPredicted RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 OCC1Q8TAD7 63 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 CMTM2Q8TAZ6 248 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 ZCCHC14Q8WYQ9 949 aaKnown RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 S1PR3Q99500 378 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 OPN3Q9H1Y3 402 aaPredicted RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 MS4A5Q9H3V2 200 aa8.29□□□□□ -1.08
COL17A1-203ENST00000393211 SLC25A10Q9UBX3 287 aaPredicted RBP8.29□□□□□ -1.08
COL17A1-203ENST00000393211 TRBV20OR9-2A0A075B6H5 130 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 RRHO14718 337 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 PROP1O75360 226 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 IGHG3P01860 377 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms