RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MAP2K4P45985 399 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 AP2S1P53680 142 aaPredicted RBP0.82□□□□□ -2.28
VPS13A-206ENST00000376646 RBM11P57052 281 aaKnown RBP0.82□□□□□ -2.28
VPS13A-206ENST00000376646 KRTAP12-1P59990 96 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 HOXC5Q00444 222 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 PLPPR5Q32ZL2 321 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 CLVS2Q5SYC1 327 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 UMODL1-AS1Q8N2C9 162 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF283Q8N7M2 679 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 SMCR5Q8TEV8 140 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 GNPNAT1Q96EK6 184 aaPredicted RBP0.82□□□□□ -2.28
VPS13A-206ENST00000376646 MRPS24Q96EL2 167 aaKnown RBP0.82□□□□□ -2.28
VPS13A-206ENST00000376646 ARL5BQ96KC2 179 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 Q9BRP9 147 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 TAAR3PQ9P1P4 343 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 C3orf18Q9UK00 162 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 KLK5Q9Y337 293 aaPredicted RBP0.82□□□□□ -2.28
VPS13A-206ENST00000376646 PLXNA3P51805 1871 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 NYNRINQ9P2P1 1898 aaKnown RBP0.82□□□□□ -2.28
VPS13A-206ENST00000376646 STRCP1A6NGW2 1772 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 RFPL4AA6NLU0 287 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 RFPL4AL1F8VTS6 287 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 NIPSNAP2O75323 286 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 NPYP01303 97 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 IFI30P13284 250 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 CCL1P22362 96 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 PRDX4Q13162 271 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 LRRC75BQ2VPJ9 315 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 COQ5Q5HYK3 327 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 CD200R1LQ6Q8B3 271 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 SLC35E3Q7Z769 313 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 LHFPL1Q86WI0 220 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 GID4Q8IVV7 300 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 JOSD2Q8TAC2 188 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 RNF133Q8WVZ7 376 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 DIRAS2Q96HU8 199 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 TMEM222Q9H0R3 208 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 OR51I1Q9H343 314 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 XPNPEP1Q9NQW7 623 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 FKBP14Q9NWM8 211 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 NDUFB11Q9NX14 153 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 PXMP4Q9Y6I8 212 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 SCN9AQ15858 1988 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 KDM5BQ9UGL1 1544 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 HELZ2Q9BYK8 2649 aaKnown RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 PXDNLA1KZ92 1463 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 NCKAP5O14513 1909 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 TRGV5A0A0B4J1U4 118 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 ARRDC5A6NEK1 342 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 J3QQQ9 107 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 BHLHE40O14503 412 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 TGOLN2O43493 480 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 IGKV1-16P04430 117 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 KRT7P08729 469 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 MYL12AP19105 171 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 CCR7P32248 378 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 SLCO1A2P46721 670 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 TCL1AP56279 114 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 RPL26P61254 145 aaKnown RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF90Q03938 601 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 OR51D1Q8NGF3 324 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 OR51T1Q8NGJ9 327 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF675Q8TD23 568 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 DCANP1Q8TF63 244 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 PTH2Q96A98 100 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 OR51I2Q9H344 312 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 RPL26L1Q9UNX3 145 aaKnown RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 FAM215AQ9Y5M1 114 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 ABCC12Q96J65 1359 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 UBR4Q5T4S7 5183 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 SIPA1L1O43166 1804 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 SORL1Q92673 2214 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 GRIN2BQ13224 1484 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 COL5A3P25940 1745 aaPredicted RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 USP9XQ93008 2570 aaPredicted RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 SETD2Q9BYW2 2564 aaPredicted RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 C9orf84Q5VXU9 1444 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 A0A1B0GVG6 124 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 TMEM269A0A1B0GVZ9 245 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 DISC1C4P0D8 188 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 ACOX3O15254 700 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 ISG15P05161 165 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 CALB1P05937 261 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 CD24P25063 80 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 CCR2P41597 374 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 NAA20P61599 178 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 FKBP1AP62942 108 aaKnown RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 ERHP84090 104 aaKnown RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 TPRXLQ17RH7 258 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 PCOTHQ58A44 107 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 PTRHD1Q6GMV3 140 aaKnown RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 C5orf46Q6UWT4 87 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF550Q7Z398 422 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 C10orf67Q8IYJ2 551 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 OR5J2Q8NH18 312 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 SGMS2Q8NHU3 365 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 KLF6Q99612 283 aaPredicted RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 PARD6GQ9BYG4 376 aaPredicted RBP0.81□□□□□ -2.28
VPS13A-206ENST00000376646 PRELID1Q9Y255 219 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 V9GYY5 206 aaPredicted RBP0.81□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms