RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 FXYD3Q14802 87 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 RNASE10Q5GAN6 216 aaKnown RBP13.29□□□□□ -0.28
CLN3-203ENST00000357806 KLHL30-AS1Q8NEE0 82 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 FAM103A1Q9BTL3 118 aaKnown RBP13.29□□□□□ -0.28
CLN3-203ENST00000357806 A3GALT2U3KPV4 340 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 M0QYG6 137 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 CTDSPLO15194 276 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 IFNA6P05013 189 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 SAA1P0DJI8 122 aaPredicted RBP13.28□□□□□ -0.28
CLN3-203ENST00000357806 TAS2R19P59542 299 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 AKIRIN2Q53H80 203 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 C19orf54Q5BKX5 351 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 AADACL3Q5VUY0 350 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 LPCAT3Q6P1A2 487 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 TMEM65Q6PI78 240 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 IDO2Q6ZQW0 420 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 CMTM1Q8IZ96 169 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 SPAG16Q8N0X2 631 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 MINDY2Q8NBR6 621 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 GRPEL2Q8TAA5 225 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 SMIM4Q8WVI0 70 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 FOXA2Q9Y261 457 aaPredicted RBP13.28□□□□□ -0.28
CLN3-203ENST00000357806 NUBP2Q9Y5Y2 271 aa13.28□□□□□ -0.28
CLN3-203ENST00000357806 GPR31O00270 319 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 ARPC1BO15143 372 aaKnown RBP13.27□□□□□ -0.29
CLN3-203ENST00000357806 RBFOX2O43251 390 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLN3-203ENST00000357806 IGLV1-40P01703 118 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 CD3DP04234 171 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 EGR2P11161 476 aaPredicted RBP13.27□□□□□ -0.29
CLN3-203ENST00000357806 PJVKQ0ZLH3 352 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 UNQ5815/PRO19632Q6UWF5 114 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 LCNL1Q6ZST4 164 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 ZNF695Q8IW36 515 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 ARRDC1Q8N5I2 433 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 POC5Q8NA72 575 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 TMEM229BQ8NBD8 167 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 OR51H1Q8NH63 302 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 VSTM2AQ8TAG5 236 aa13.27□□□□□ -0.29
CLN3-203ENST00000357806 RAMP3O60896 148 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 HRASP01112 189 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 RLN1P04808 185 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 S100GP29377 79 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 TNFSF8P32971 234 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 BRWD1-AS2P59051 145 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 SSBP2P81877 361 aaPredicted RBP13.26□□□□□ -0.29
CLN3-203ENST00000357806 TNXAQ16473 311 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 PRSS8Q16651 343 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 C8orf86Q6ZUL3 223 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 LFNGQ8NES3 379 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 OR5M8Q8NGP6 311 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 CD300LFQ8TDQ1 290 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 AIFM2Q9BRQ8 373 aa13.26□□□□□ -0.29
CLN3-203ENST00000357806 TINAGL1Q9GZM7 467 aaPredicted RBP13.26□□□□□ -0.29
CLN3-203ENST00000357806 ACTL6BO94805 426 aa13.25□□□□□ -0.29
CLN3-203ENST00000357806 S100A5P33763 92 aa13.25□□□□□ -0.29
CLN3-203ENST00000357806 CDX1P47902 265 aaPredicted RBP13.25□□□□□ -0.29
CLN3-203ENST00000357806 UCP3P55916 312 aa13.25□□□□□ -0.29
CLN3-203ENST00000357806 C18orf65Q6ZTR6 163 aa13.25□□□□□ -0.29
CLN3-203ENST00000357806 MMD2Q8IY49 270 aa13.25□□□□□ -0.29
CLN3-203ENST00000357806 SLC38A6Q8IZM9 456 aa13.25□□□□□ -0.29
CLN3-203ENST00000357806 VKORC1L1Q8N0U8 176 aa13.25□□□□□ -0.29
CLN3-203ENST00000357806 MYOZ3Q8TDC0 251 aa13.25□□□□□ -0.29
CLN3-203ENST00000357806 ZNF430Q9H8G1 570 aaPredicted RBP13.25□□□□□ -0.29
CLN3-203ENST00000357806 FABP12A6NFH5 140 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 SOX15O60248 233 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 PGLYRP1O75594 196 aaPredicted RBP13.24□□□□□ -0.29
CLN3-203ENST00000357806 KBTBD11O94819 623 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 OR2A4O95047 310 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 HPRT1P00492 218 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 CD74P04233 296 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 CD40LGP29965 261 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 TAS2R31P59538 309 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 MRGPRG-AS1Q2M3A8 158 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 STEAP1BQ6NZ63 245 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 RHOVQ96L33 236 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 TMEM68Q96MH6 324 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 OR2A7Q96R45 310 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 PHB2Q99623 299 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 RSRP1Q9BUV0 290 aa13.24□□□□□ -0.29
CLN3-203ENST00000357806 RAB3DO95716 219 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 CD33P20138 364 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 RAB9AP51151 201 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 MEF2DQ14814 521 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 PHLDA2Q53GA4 152 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 LHFPL1Q86WI0 220 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 PUSL1Q8N0Z8 303 aaKnown RBP13.23□□□□□ -0.29
CLN3-203ENST00000357806 C4orf3Q8WVX3 66 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 SRSF12Q8WXF0 261 aaKnown RBP13.23□□□□□ -0.29
CLN3-203ENST00000357806 UBE2E2Q96LR5 201 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 KLK15Q9H2R5 256 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 PLEKHA2Q9HB19 425 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 COMMD9Q9P000 198 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 NDUFA13Q9P0J0 144 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 GSTZ1O43708 216 aaPredicted RBP13.23□□□□□ -0.29
CLN3-203ENST00000357806 NQO2P16083 231 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 F2RP25116 425 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 ETV3LQ6ZN32 361 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 SSX9Q7RTT3 188 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 ZNF491Q8N8L2 437 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 OR4D10Q8NGI6 311 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 140.8 ms