RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TRAV3A0A0B4J244 114 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TRAV1-1A0A0B4J248 108 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 A0A0D9SG52 128 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 DUXBA0A1W2PPF3 345 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 RAB19A4D1S5 217 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 CDIPTO14735 213 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 HSD17B6O14756 317 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 WDR1O75083 606 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TUBG1P23258 451 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 S100A1P23297 94 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 F2RP25116 425 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 FCGR2CP31995 323 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 SSTR5P35346 364 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 P2RY1P47900 373 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 NPBWR1P48145 328 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 LUMP51884 338 aaPredicted RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 TMEM33P57088 247 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ARG2P78540 354 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 SLC9A3R2Q15599 337 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TMEM249Q2WGJ8 235 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 MORN2Q502X0 79 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 RNASE10Q5GAN6 216 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 CT45A1Q5HYN5 189 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 PAPPA-AS1Q5QFB9 102 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 PRAMEF6Q5VXH4 476 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ZNF546Q86UE3 836 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 FAM58AQ8N1B3 248 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ZNF525Q8N782 197 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 CT45A3Q8NHU0 189 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 FAM216AQ8WUB2 273 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 NEUROG1Q92886 237 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 LURAP1Q96LR2 239 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 PPA2Q9H2U2 334 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ESRP2Q9H6T0 727 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 CHMP1AQ9HD42 196 aaPredicted RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 PARP11Q9NR21 331 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TUBG2Q9NRH3 451 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TMEM14BQ9NUH8 114 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 NECAP2Q9NVZ3 263 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 EHFQ9NZC4 300 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 CKLFQ9UBR5 152 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 UBQLN2Q9UHD9 624 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ING4Q9UNL4 249 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 HIVEP3Q5T1R4 2406 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 FBN1P35555 2871 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 ABCA12Q86UK0 2595 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 SONP18583 2426 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 DISC1C4P0D8 188 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 E7EQL1 145 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TEX46H3BTG2 121 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 RBMXL2O75526 392 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 YIF1AO95070 293 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 IGLV1-47P01700 117 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 IGHV2-5P01817 119 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 SLPIP03973 132 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 NR2C1P13056 603 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 GLIPR1P48060 266 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 PCP4P48539 62 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 CAV2P51636 162 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 KRTAP10-11P60412 298 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 UBA52P62987 128 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 GNG3P63215 75 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 EWSR1Q01844 656 aaKnown RBP eCLIP1.85□□□□□ -2.11
VPS54-202ENST00000354504 FAM27E3Q08E93 113 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 HNF4GQ14541 408 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 EFNB3Q15768 340 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 SCGB2B2Q4G0G5 96 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 BEX5Q5H9J7 111 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 C1orf185Q5T7R7 199 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 SERTAD4-AS1Q5TG53 156 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 PLCXD3Q63HM9 321 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ZNF343Q6P1L6 599 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 BHLHA15Q7RTS1 189 aaPredicted RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 TMED4Q7Z7H5 227 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 MCEMP1Q8IX19 187 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ZNF843Q8N446 348 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ZNF645Q8N7E2 425 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 CSNK2A3Q8NEV1 391 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 OR10G9Q8NGN4 311 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 PIGCQ92535 297 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 SUCNR1Q9BXA5 334 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 MAP6D1Q9H9H5 199 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 MSRB1Q9NZV6 116 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 KAAG1Q9UBP8 84 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 RALYQ9UKM9 306 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 MMP24Q9Y5R2 645 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 PKD1L2Q7Z442 2459 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 TRBV20OR9-2A0A075B6H5 130 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 TMEM218A2RU14 115 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 METTL21EPA6NDL7 271 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 ODF3BA8MYP8 253 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 DEGS1O15121 323 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 SSNA1O43805 119 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 YPEL1O60688 119 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 HAND1O96004 215 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 APOC1P02654 83 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 LINC00869P0C866 280 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 CT45A6P0DMU7 189 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 CT45A5P0DMU8 189 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 CT45A7P0DMV0 189 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms