RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TRAV6A0A075B6T7 132 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 IGHV2-26A0A0B4J1V2 119 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 VGLL3A8MV65 326 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 PSG9Q00887 426 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 BCDIN3DQ7Z5W3 292 aaKnown RBP6.99□□□□□ -1.29
HMGB1-203ENST00000341423 C5orf17Q8NAS9 161 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 SNRNP27Q8WVK2 155 aaKnown RBP6.99□□□□□ -1.29
HMGB1-203ENST00000341423 RNF133Q8WVZ7 376 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 SLC25A38Q96DW6 304 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 TECRQ9NZ01 308 aaKnown RBP6.99□□□□□ -1.29
HMGB1-203ENST00000341423 COL4A6Q14031 1691 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 IGHV2-5P01817 119 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 S100A6P06703 90 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 PSG2P11465 335 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 CDKN1BP46527 198 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 RPL5P46777 297 aaKnown RBP6.98□□□□□ -1.29
HMGB1-203ENST00000341423 UBE2L3P68036 154 aaKnown RBP6.98□□□□□ -1.29
HMGB1-203ENST00000341423 ACTL10Q5JWF8 245 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 C10orf128Q5T292 105 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 FAM74A4Q5TZK3 123 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 FAM219BQ5XKK7 198 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 OR52I2Q8NH67 350 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 C20orf27Q9GZN8 174 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 ZNF331Q9NQX6 463 aaPredicted RBP6.98□□□□□ -1.29
HMGB1-203ENST00000341423 MIA3Q5JRA6 1907 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 MSGN1A6NI15 193 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 SLC31A2O15432 143 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 CDKN2AP42771 156 aaKnown RBP6.98□□□□□ -1.29
HMGB1-203ENST00000341423 FAM3AP98173 230 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 SLC35E4Q6ICL7 350 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 RXFP4Q8TDU9 374 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 GLMPQ8WWB7 406 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 UQCC1Q9NVA1 299 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 TNCP24821 2201 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 KIF13BQ9NQT8 1826 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 J3QL48 77 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 MDKP21741 143 aaPredicted RBP6.98□□□□□ -1.29
HMGB1-203ENST00000341423 HCCSP53701 268 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 ZNF767PQ75MW2 155 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 CDK2AP2O75956 126 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 IL4P05112 153 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 IGHV4-31P0DP07 118 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 AMTP48728 403 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 EFNB1P98172 346 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 LRP11Q86VZ4 500 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 C11orf45Q8TAV5 145 aa6.98□□□□□ -1.29
HMGB1-203ENST00000341423 C19orf84I3L1E1 186 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 GEMIN2O14893 280 aaKnown RBP6.97□□□□□ -1.29
HMGB1-203ENST00000341423 FGF7P21781 194 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 MGAT2Q10469 447 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 OR5AN1Q8NGI8 311 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 PRR25Q96S07 402 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 FAM103A1Q9BTL3 118 aaKnown RBP6.97□□□□□ -1.29
HMGB1-203ENST00000341423 NDUFAF3Q9BU61 184 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 FER1L5A0AVI2 2057 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 NUPR2A6NF83 97 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 FAM223BA6NKX1 122 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 TMEM41BQ5BJD5 291 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 SPNS2Q8IVW8 549 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 FAM223AQ8IWN6 122 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 GNPNAT1Q96EK6 184 aaPredicted RBP6.97□□□□□ -1.29
HMGB1-203ENST00000341423 ABHD14BQ96IU4 210 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 IGHV3-66A0A0C4DH42 116 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 TMEM189A5PLL7 270 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 RND2P52198 227 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 TRGV11A0A075B6L2 103 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 C5orf64Q2M2E5 130 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 C6orf201Q7Z4U5 140 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 ZNF383Q8NA42 475 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 GGTLC1Q9BX51 225 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 NKX6-2Q9C056 277 aaPredicted RBP6.97□□□□□ -1.29
HMGB1-203ENST00000341423 HSF4Q9ULV5 492 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 TRGV1A0A0A0MS02 117 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 C12orf77C9JDV5 145 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 IGF2P01344 180 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 HKR1P10072 659 aa6.97□□□□□ -1.29
HMGB1-203ENST00000341423 TMEM235A6NFC5 223 aa6.96□□□□□ -1.29
HMGB1-203ENST00000341423 KBTBD11O94819 623 aa6.96□□□□□ -1.29
HMGB1-203ENST00000341423 SPDEFO95238 335 aa6.96□□□□□ -1.29
HMGB1-203ENST00000341423 S100A2P29034 98 aa6.96□□□□□ -1.29
HMGB1-203ENST00000341423 IL24Q13007 206 aa6.96□□□□□ -1.29
HMGB1-203ENST00000341423 MESTQ5EB52 335 aa6.96□□□□□ -1.29
HMGB1-203ENST00000341423 RHOUQ7L0Q8 258 aa6.96□□□□□ -1.29
HMGB1-203ENST00000341423 RPUSD4Q96CM3 377 aaKnown RBP6.96□□□□□ -1.29
HMGB1-203ENST00000341423 PSMG3-AS1Q96PY0 264 aa6.96□□□□□ -1.29
HMGB1-203ENST00000341423 IGHV1-8P0DP01 117 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 PAX1P15863 534 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 OR2W1Q9Y3N9 320 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 RRHO14718 337 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 IGKV1D-16P01601 117 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 FUT5Q11128 374 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 SPINK9Q5DT21 86 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 MRPL30Q8TCC3 161 aaKnown RBP6.96□□□□□ -1.3
HMGB1-203ENST00000341423 LGALS14Q8TCE9 139 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 OR5P3Q8WZ94 311 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 GPR82Q96P67 336 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 CITED2Q99967 270 aaPredicted RBP6.96□□□□□ -1.3
HMGB1-203ENST00000341423 EDA2RQ9HAV5 297 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 TCF19Q9Y242 345 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 ZNF257Q9Y2Q1 563 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms