RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FAM24AA6NFZ4 105 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 H0YJW9 148 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 OR9G9P0C7N8 305 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 PRRX1P54821 245 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 ERVK-16P61578 105 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 EWSR1Q01844 656 aaKnown RBP eCLIP12.57□□□□□ -0.4
LIMS1-202ENST00000338045 RTL8BQ17RB0 113 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 HLA-DRB5Q30154 266 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 C1orf122Q6ZSJ8 110 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 TMEM252Q8N6L7 170 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 CLDND2Q8NHS1 167 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 NABP2Q9BQ15 211 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 RPS10-NUDT3A0A1W2PQS6 291 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 IGSF23A1L1A6 192 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 GAPDHP04406 335 aaKnown RBP12.57□□□□□ -0.4
LIMS1-202ENST00000338045 RRASP10301 218 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 ZFP36P26651 326 aaKnown RBP12.57□□□□□ -0.4
LIMS1-202ENST00000338045 IL3RAP26951 378 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 DLX1P56177 255 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 TAS2R30P59541 319 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 UBE2KP61086 200 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 PAX2Q02962 417 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 DIAPH2-AS1Q14236 149 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 ALKAL2Q6UX46 152 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 KIR3DL3Q8N743 410 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 BSCL2Q96G97 398 aaPredicted RBP12.57□□□□□ -0.4
LIMS1-202ENST00000338045 PCGF1Q9BSM1 259 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 GSX2Q9BZM3 304 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 SLC25A31Q9H0C2 315 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 BARX1Q9HBU1 254 aaPredicted RBP12.57□□□□□ -0.4
LIMS1-202ENST00000338045 NDUFS8O00217 210 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 IGKV1-16P04430 117 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 TPT1P13693 172 aaKnown RBP12.56□□□□□ -0.4
LIMS1-202ENST00000338045 PAX1P15863 534 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 PRTN3P24158 256 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 HOXA1P49639 335 aaPredicted RBP12.56□□□□□ -0.4
LIMS1-202ENST00000338045 CAV2P51636 162 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 ARF6P62330 175 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 NHLH2Q02577 135 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 BAP18Q8IXM2 172 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 VKORC1L1Q8N0U8 176 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 OR8H3Q8N146 312 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 SMIM8Q96KF7 97 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 RHOVQ96L33 236 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 TMEM140Q9NV12 185 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 CHD6Q8TD26 2715 aa12.56□□□□□ -0.4
LIMS1-202ENST00000338045 BUB1B-PAK6H3BSN5 160 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 ENSAO43768 121 aaKnown RBP12.55□□□□□ -0.4
LIMS1-202ENST00000338045 MED6O75586 246 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 HRASP01112 189 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 APOA2P02652 100 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 IL6RP08887 468 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-202ENST00000338045 RPL23AP62750 156 aaKnown RBP12.55□□□□□ -0.4
LIMS1-202ENST00000338045 BAXQ07812 192 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 TMEM95Q3KNT9 176 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 CLLU1Q5K131 121 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 SSX9Q7RTT3 188 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 TGIF2LXQ8IUE1 241 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 OR11H6Q8NGC7 330 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 OR4P4Q8NGL7 312 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 OR13D1Q8NGV5 346 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 C10orf105Q8TEF2 133 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 UNKLQ9H9P5 680 aaKnown RBP12.55□□□□□ -0.4
LIMS1-202ENST00000338045 VWC2LB2RUY7 222 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 TXNL1O43396 289 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 REG1BP48304 166 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 ATP5J2P56134 94 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 RELBQ01201 579 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 PDLIM3Q53GG5 364 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-202ENST00000338045 RPL7L1Q6DKI1 246 aaKnown RBP12.55□□□□□ -0.4
LIMS1-202ENST00000338045 CLEC9AQ6UXN8 241 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 ZNF429Q86V71 674 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 PDPNQ86YL7 162 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 OSR1Q8TAX0 266 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-202ENST00000338045 FAM168AQ92567 244 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 RBKSQ9H477 322 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 KPTNQ9Y664 436 aa12.55□□□□□ -0.4
LIMS1-202ENST00000338045 ARHGAP32A7KAX9 2087 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 JTBO76095 146 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 PLA2G2AP14555 144 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 COX7A1P24310 79 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 EIF5AP63241 154 aaKnown RBP12.54□□□□□ -0.4
LIMS1-202ENST00000338045 TMEM177Q53S58 311 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 OR4A47Q6IF82 309 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 UBAC2Q8NBM4 344 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 OR52E5Q8NH55 327 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 PIMREGQ9BSJ6 248 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 CACFD1Q9UGQ2 172 aa12.54□□□□□ -0.4
LIMS1-202ENST00000338045 AMMECR1Q9Y4X0 333 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-202ENST00000338045 SRRM4A7MD48 611 aaKnown RBP12.53□□□□□ -0.4
LIMS1-202ENST00000338045 F8W036 122 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 LY6LH3BQJ8 138 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 IAPPP10997 89 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 PRB3Q04118 309 aaPredicted RBP12.53□□□□□ -0.4
LIMS1-202ENST00000338045 HCP5Q6MZN7 132 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 PNKDQ8N490 385 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 QTRT1Q9BXR0 403 aaKnown RBP12.53□□□□□ -0.4
LIMS1-202ENST00000338045 SMIM3Q9BZL3 60 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 WFDC1Q9HC57 220 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 SIRT7Q9NRC8 400 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms