RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 ZNF137PP52743 207 aa13.28□□□□□ -0.28
SHOX-201ENST00000334060 LGALS4P56470 323 aa13.28□□□□□ -0.28
SHOX-201ENST00000334060 RBMS2Q15434 407 aaKnown RBP13.28□□□□□ -0.28
SHOX-201ENST00000334060 TMEM30BQ3MIR4 351 aa13.28□□□□□ -0.28
SHOX-201ENST00000334060 PIFOQ8TCI5 191 aa13.28□□□□□ -0.28
SHOX-201ENST00000334060 RPEQ96AT9 228 aa13.28□□□□□ -0.28
SHOX-201ENST00000334060 PIPOXQ9P0Z9 390 aa13.28□□□□□ -0.28
SHOX-201ENST00000334060 ITGB1BP1O14713 200 aa13.27□□□□□ -0.28
SHOX-201ENST00000334060 RPA2P15927 270 aa13.27□□□□□ -0.28
SHOX-201ENST00000334060 RAB7AP51149 207 aa13.27□□□□□ -0.28
SHOX-201ENST00000334060 COQ8AQ8NI60 647 aa13.27□□□□□ -0.28
SHOX-201ENST00000334060 SEC22CQ9BRL7 303 aa13.27□□□□□ -0.28
SHOX-201ENST00000334060 PDCD10Q9BUL8 212 aa13.27□□□□□ -0.28
SHOX-201ENST00000334060 RAB19A4D1S5 217 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 GPR31O00270 319 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 MEOX2P50222 304 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 PPP1R1AQ13522 171 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 HNF4GQ14541 408 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 MOB3BQ86TA1 216 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 TGIF2LXQ8IUE1 241 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 OR1S1Q8NH92 325 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 DDB2Q92466 427 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 CXorf58Q96LI9 332 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 MS4A7Q9GZW8 240 aaPredicted RBP13.27□□□□□ -0.29
SHOX-201ENST00000334060 COA4Q9NYJ1 87 aa13.27□□□□□ -0.29
SHOX-201ENST00000334060 A0A0D9SG52 128 aa13.26□□□□□ -0.29
SHOX-201ENST00000334060 APOC3P02656 99 aa13.26□□□□□ -0.29
SHOX-201ENST00000334060 S100A8P05109 93 aa13.26□□□□□ -0.29
SHOX-201ENST00000334060 CTSDP07339 412 aaPredicted RBP13.26□□□□□ -0.29
SHOX-201ENST00000334060 UCP3P55916 312 aa13.26□□□□□ -0.29
SHOX-201ENST00000334060 VKORC1L1Q8N0U8 176 aa13.26□□□□□ -0.29
SHOX-201ENST00000334060 SVBPQ8N300 66 aa13.26□□□□□ -0.29
SHOX-201ENST00000334060 H0YJW9 148 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 IGHV4-59P01825 116 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 ZNF816Q0VGE8 651 aaPredicted RBP13.25□□□□□ -0.29
SHOX-201ENST00000334060 SLC9A3R2Q15599 337 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 MIDNQ504T8 468 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 ZNF585BQ52M93 769 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 TMEM219Q86XT9 240 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 SPAG16Q8N0X2 631 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 TCTEX1D2Q8WW35 142 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 SH2D7A6NKC9 451 aaPredicted RBP13.25□□□□□ -0.29
SHOX-201ENST00000334060 IGKV1-39P01597 117 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 IGKV1D-39P04432 117 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 OR5AC1P0C628 307 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 SRP14P37108 136 aaKnown RBP13.25□□□□□ -0.29
SHOX-201ENST00000334060 POLR2GP62487 172 aaKnown RBP eCLIP13.25□□□□□ -0.29
SHOX-201ENST00000334060 LY6EQ16553 131 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 IZUMO4Q1ZYL8 232 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 KCTD9Q7L273 389 aa13.25□□□□□ -0.29
SHOX-201ENST00000334060 SRRM4A7MD48 611 aaKnown RBP13.24□□□□□ -0.29
SHOX-201ENST00000334060 MPPED1O15442 326 aa13.24□□□□□ -0.29
SHOX-201ENST00000334060 FCGR3BO75015 233 aa13.24□□□□□ -0.29
SHOX-201ENST00000334060 SMIM6P0DI80 62 aa13.24□□□□□ -0.29
SHOX-201ENST00000334060 ABCA11PQ4W5N1 156 aa13.24□□□□□ -0.29
SHOX-201ENST00000334060 SIGLECL1Q8N7X8 197 aa13.24□□□□□ -0.29
SHOX-201ENST00000334060 TCEAL7Q9BRU2 100 aa13.24□□□□□ -0.29
SHOX-201ENST00000334060 ARL6Q9H0F7 186 aa13.24□□□□□ -0.29
SHOX-201ENST00000334060 TBL2Q9Y4P3 447 aaKnown RBP13.24□□□□□ -0.29
SHOX-201ENST00000334060 SETD2Q9BYW2 2564 aaPredicted RBP13.24□□□□□ -0.29
SHOX-201ENST00000334060 IGKV1D-33P01593 117 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 IGKV1-33P01594 117 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 SNRNP70P08621 437 aaKnown RBP13.23□□□□□ -0.29
SHOX-201ENST00000334060 ANKRD55Q3KP44 614 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 MINOS1Q5TGZ0 78 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 FAM219AQ8IW50 185 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 ZDHHC22Q8N966 263 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 CASTOR1Q8WTX7 329 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 PCNPQ8WW12 178 aaKnown RBP13.23□□□□□ -0.29
SHOX-201ENST00000334060 MALSU1Q96EH3 234 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 S1PR3Q99500 378 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 SLC25A21Q9BQT8 299 aaPredicted RBP13.23□□□□□ -0.29
SHOX-201ENST00000334060 ESM1Q9NQ30 184 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 MINOS1-NBL1R4GNA1 71 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 CRYM-AS1A6NIL9 109 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 GATCO43716 136 aaKnown RBP13.23□□□□□ -0.29
SHOX-201ENST00000334060 S1PR2O95136 353 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 VENTXO95231 258 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 GAPDHP04406 335 aaKnown RBP13.23□□□□□ -0.29
SHOX-201ENST00000334060 F2RL1P55085 397 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 OR5AN1Q8NGI8 311 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 SSX3Q99909 188 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 TPSG1Q9NRR2 321 aa13.23□□□□□ -0.29
SHOX-201ENST00000334060 C14orf166Q9Y224 244 aaKnown RBP13.23□□□□□ -0.29
SHOX-201ENST00000334060 AMMECR1Q9Y4X0 333 aaPredicted RBP13.23□□□□□ -0.29
SHOX-201ENST00000334060 H3BUX3 64 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 ATG12O94817 140 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 S100A9P06702 114 aaKnown RBP13.22□□□□□ -0.29
SHOX-201ENST00000334060 OR4E1P0C645 316 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 VAMP1P23763 118 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 F2RP25116 425 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 AKR1D1P51857 326 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 SURF2Q15527 256 aaPredicted RBP13.22□□□□□ -0.29
SHOX-201ENST00000334060 ALKAL2Q6UX46 152 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 SLC25A42Q86VD7 318 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 NAA60Q9H7X0 242 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 GAB2Q9UQC2 676 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 FAM96BQ9Y3D0 163 aa13.22□□□□□ -0.29
SHOX-201ENST00000334060 A0A0G2JRQ6 117 aa13.21□□□□□ -0.29
SHOX-201ENST00000334060 HOXA3O43365 443 aaPredicted RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms