RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 AKR1E2Q96JD6 320 aa8.21□□□□□ -1.1
HMGB3-201ENST00000325307 PDCD10Q9BUL8 212 aa8.21□□□□□ -1.1
HMGB3-201ENST00000325307 RNF126Q9BV68 326 aa8.21□□□□□ -1.1
HMGB3-201ENST00000325307 TMEM133Q9H2Q1 129 aa8.21□□□□□ -1.1
HMGB3-201ENST00000325307 MMP26Q9NRE1 261 aa8.21□□□□□ -1.1
HMGB3-201ENST00000325307 CRYBA1P05813 215 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 OR5AC1P0C628 307 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 DEFA5Q01523 94 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 KCNRGQ8N5I3 272 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 RRNAD1Q96FB5 475 aaKnown RBP8.2□□□□□ -1.1
HMGB3-201ENST00000325307 TCEAL7Q9BRU2 100 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 AGMATQ9BSE5 352 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 NMES1Q9C002 83 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 TREM1Q9NP99 234 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 A0A0B4J2A0 478 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 C3orf85A0A1B0GTC6 90 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 M0R1X1 148 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 RPL39P5Q59GN2 51 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 FAM74A1Q5RGS3 127 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 MISP3Q96FF7 219 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 PCGF1Q9BSM1 259 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 IFI27L2Q9H2X8 130 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 METTL1Q9UBP6 276 aaKnown RBP8.2□□□□□ -1.1
HMGB3-201ENST00000325307 SHPKQ9UHJ6 478 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 IGHV2-70DA0A0C4DH43 119 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 COLCA2A8K830 154 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 RAB29O14966 203 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 PVALBP20472 110 aaPredicted RBP8.2□□□□□ -1.1
HMGB3-201ENST00000325307 RND3P61587 244 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 C11orf42Q8N5U0 333 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 OR9G1Q8NH87 305 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 TCTEX1D2Q8WW35 142 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 MBD6Q96DN6 1003 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 METTL8Q9H825 291 aaKnown RBP8.2□□□□□ -1.1
HMGB3-201ENST00000325307 RAB18Q9NP72 206 aa8.2□□□□□ -1.1
HMGB3-201ENST00000325307 CSMD2Q7Z408 3487 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 NUDT19A8MXV4 375 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 RNF223E7ERA6 249 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 M0R1W7 72 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 SPDEFO95238 335 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 IGLV2-14P01704 120 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 SLC25A48Q6ZT89 311 aaKnown RBP8.19□□□□□ -1.1
HMGB3-201ENST00000325307 MAPK1IP1LQ8NDC0 245 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 RXFP4Q8TDU9 374 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 TP53RKQ96S44 253 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 CCDC168Q8NDH2 2452 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 UNC79Q9P2D8 2635 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 IGHV2-26A0A0B4J1V2 119 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 C13orf42A0A1B0GVH6 325 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 RNF212BA8MTL3 300 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 J3QR06 171 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 RBP4P02753 201 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 SERPINE2P07093 398 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 LYL1P12980 280 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 F2RP25116 425 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 CATR1Q13166 79 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 PNKDQ8N490 385 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 ZBTB34Q8NCN2 500 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 ZNF439Q8NDP4 499 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 FAM216AQ8WUB2 273 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 RHOVQ96L33 236 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 Q96MF0 132 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 S1PR3Q99500 378 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 CLEC7AQ9BXN2 247 aa8.19□□□□□ -1.1
HMGB3-201ENST00000325307 SAA2-SAA4A0A096LPE2 208 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 MSGN1A6NI15 193 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 LINC00614P0C842 121 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 SAA2P0DJI9 122 aaPredicted RBP8.18□□□□□ -1.1
HMGB3-201ENST00000325307 PRRX1P54821 245 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 CBLN2Q8IUK8 224 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 OR13D1Q8NGV5 346 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 TNFRSF14Q92956 283 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 OR5AC2Q9NZP5 309 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 A0A1W2PRD5 423 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 A0A1W2PRF3 423 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 A0A1W2PRM7 423 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 C5orf51A6NDU8 294 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 VMO1Q7Z5L0 202 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 Q8N7P7 452 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 BSCL2Q96G97 398 aaPredicted RBP8.18□□□□□ -1.1
HMGB3-201ENST00000325307 C5orf30Q96GV9 206 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 SEPSECSQ9HD40 501 aaKnown RBP8.18□□□□□ -1.1
HMGB3-201ENST00000325307 LIN7CQ9NUP9 197 aaKnown RBP8.18□□□□□ -1.1
HMGB3-201ENST00000325307 KPTNQ9Y664 436 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 BCL2L11O43521 198 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 TOX4O94842 621 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 SCAF4O95104 1147 aaKnown RBP8.18□□□□□ -1.1
HMGB3-201ENST00000325307 HOXB5P09067 269 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 PSMB6P28072 239 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 DVL1P1P54792 670 aaPredicted RBP8.18□□□□□ -1.1
HMGB3-201ENST00000325307 KLRD1Q13241 179 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 R3HDM4Q96D70 268 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 GALNT14Q96FL9 552 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 HSD17B10Q99714 261 aaKnown RBP8.18□□□□□ -1.1
HMGB3-201ENST00000325307 SEC11CQ9BY50 192 aa8.18□□□□□ -1.1
HMGB3-201ENST00000325307 A0A0D9SG52 128 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 OR2F2O95006 317 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 IL3RAP26951 378 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 REG1BP48304 166 aa8.17□□□□□ -1.1
HMGB3-201ENST00000325307 LINC00205P59089 165 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms