RNA–Protein interactions for RNA: ENST00000293880.9

SSRP1-202, Transcript of structure specific recognition protein 1, humanhuman

TSL 2

Gene SSRP1, Length 6,296 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-202ENST00000293880 SRXN1Q9BYN0 137 aa13.83□□□□□ -0.2
SSRP1-202ENST00000293880 TMEM56-RWDD3S4R434 201 aa13.83□□□□□ -0.2
SSRP1-202ENST00000293880 ZNF646O15015 1829 aaPredicted RBP13.83□□□□□ -0.2
SSRP1-202ENST00000293880 ABCA3Q99758 1704 aa13.83□□□□□ -0.2
SSRP1-202ENST00000293880 CXorf51AA0A1B0GTR3 108 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 C17orf51A8MQB3 221 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 SLC17A3O00476 420 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 IDI2-AS1Q9NZ38 188 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 RPL8P62917 257 aaKnown RBP13.82□□□□□ -0.2
SSRP1-202ENST00000293880 SERF2P84101 59 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 SLC22A18ASQ8N1D0 253 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 SIGMAR1Q99720 223 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 IGKV3D-20A0A0C4DH25 116 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 IGKV1-8A0A0C4DH67 115 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 RRHO14718 337 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 NPFFO15130 113 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 PMCHL2Q9BQD1 86 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 ASCC3Q8N3C0 2202 aaKnown RBP13.82□□□□□ -0.2
SSRP1-202ENST00000293880 C9JCJ5 164 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 CIRBPQ14011 172 aaKnown RBP13.82□□□□□ -0.2
SSRP1-202ENST00000293880 C7orf66A4D0T2 115 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 NDUFA3O95167 84 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 FAM106CPP0CH98 169 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 HIST1H1AQ02539 215 aaPredicted RBP13.82□□□□□ -0.2
SSRP1-202ENST00000293880 VAX1Q5SQQ9 334 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 C1orf53Q5VUE5 145 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 GPR132Q9UNW8 380 aa13.82□□□□□ -0.2
SSRP1-202ENST00000293880 OR10AG1Q8NH19 301 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 PRF1P14222 555 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 ATP1A1-AS1Q5TC04 95 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 COX11Q9Y6N1 276 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 PSG9Q00887 426 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 NAA38Q9BRA0 125 aaKnown RBP13.81□□□□□ -0.2
SSRP1-202ENST00000293880 NPIPB6E9PJ23 425 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 LIMS1P48059 325 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 PRB3Q04118 309 aaPredicted RBP13.81□□□□□ -0.2
SSRP1-202ENST00000293880 TNFRSF9Q07011 255 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 TFF3Q07654 80 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 RPL39P5Q59GN2 51 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 CENPWQ5EE01 88 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 F5P12259 2224 aa13.81□□□□□ -0.2
SSRP1-202ENST00000293880 TNFSF10P50591 281 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 MYO16Q9Y6X6 1858 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 SMCHD1A6NHR9 2005 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 FCARP24071 287 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 LINC00305Q7Z4B0 112 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 MARVELD3Q96A59 401 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 ELOVL5Q9NYP7 299 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 TRBV20OR9-2A0A075B6H5 130 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 HLA-DQA1P01909 254 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 FBLN7Q53RD9 439 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 STPG3Q8N7X2 389 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 LRP5O75197 1615 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 TRBV5-5A0A0J9YX44 114 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 C4orf51C9J302 202 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 ATP5G2Q06055 141 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 TNFRSF14Q92956 283 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 MS4A5Q9H3V2 200 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 KIF13BQ9NQT8 1826 aa13.8□□□□□ -0.2
SSRP1-202ENST00000293880 MPDU1O75352 247 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 ZFP36L2P47974 494 aaKnown RBP13.79□□□□□ -0.2
SSRP1-202ENST00000293880 GLIPR1P48060 266 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 CRYBA2P53672 197 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 P2RY6Q15077 328 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 MMD2Q8IY49 270 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 MRPS18AQ9NVS2 196 aaKnown RBP13.79□□□□□ -0.2
SSRP1-202ENST00000293880 SCN3AQ9NY46 2000 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 MESP2Q0VG99 397 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 DLL3Q9NYJ7 618 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 LCN2P80188 198 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 TMEM187Q14656 261 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 TMEM249Q2WGJ8 235 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 DDB2Q92466 427 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 IGHV3OR16-8A0A075B7F1 116 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 UCP3P55916 312 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 SUMO2P61956 95 aaKnown RBP13.79□□□□□ -0.2
SSRP1-202ENST00000293880 CCDC144NLQ6NUI1 221 aa13.79□□□□□ -0.2
SSRP1-202ENST00000293880 REPIN1Q9BWE0 567 aaKnown RBP13.79□□□□□ -0.2
SSRP1-202ENST00000293880 MPV17P39210 176 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 HBBP68871 147 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 LHFPL6Q9Y693 200 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 MARCH11A6NNE9 402 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 MT-ND6P03923 174 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 FSTP19883 344 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 ACSF3Q4G176 576 aaPredicted RBP13.78□□□□□ -0.2
SSRP1-202ENST00000293880 CACNA1CQ13936 2221 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 SCO2A0A1W2PP80 73 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 ZP4Q12836 540 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 GEMIN7Q9H840 131 aaKnown RBP13.78□□□□□ -0.2
SSRP1-202ENST00000293880 SCN1AP35498 2009 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 ZNF414Q96IQ9 312 aa13.78□□□□□ -0.2
SSRP1-202ENST00000293880 MAP1BP46821 2468 aaKnown RBP13.78□□□□□ -0.2
SSRP1-202ENST00000293880 PRR31Q5SQ13 230 aa13.77□□□□□ -0.2
SSRP1-202ENST00000293880 GCSAMQ8N6F7 178 aa13.77□□□□□ -0.2
SSRP1-202ENST00000293880 SMRP1Q8NCR6 262 aa13.77□□□□□ -0.2
SSRP1-202ENST00000293880 WNT9BO14905 357 aa13.77□□□□□ -0.2
SSRP1-202ENST00000293880 AQP10Q96PS8 301 aa13.77□□□□□ -0.2
SSRP1-202ENST00000293880 NKX2-8O15522 239 aa13.77□□□□□ -0.21
SSRP1-202ENST00000293880 C21orf140B9A014 251 aa13.77□□□□□ -0.21
SSRP1-202ENST00000293880 MGST3O14880 152 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms