RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CCL19Q99731 98 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 TRBV23-1A0A0A0MS06 115 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 ENSAO43768 121 aaKnown RBP13.41□□□□□ -0.26
USP4-201ENST00000265560 NQO2P16083 231 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 FHITP49789 147 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 GPR157Q5UAW9 335 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 OR4A47Q6IF82 309 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 OR4A16Q8NH70 328 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 OR4S2Q8NH73 311 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 OR9G1Q8NH87 305 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 LOC105371242A0A075B767 164 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 THBS3P49746 956 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 ERVK-16P61578 105 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 SLC25A32Q9H2D1 315 aa13.41□□□□□ -0.26
USP4-201ENST00000265560 ITGB1BP1O14713 200 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 SHOXO15266 292 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 SLC25A6P12236 298 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 RPL23AP62750 156 aaKnown RBP13.4□□□□□ -0.26
USP4-201ENST00000265560 LDLRAD2Q5SZI1 272 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 Q8N7P7 452 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 LPAR3Q9UBY5 353 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 ITPR2Q14571 2701 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 A0A1B0GV50 99 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 CD24P25063 80 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 ZNF833PQ6ZTB9 187 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 HAPLN4Q86UW8 402 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 STOML3Q8TAV4 291 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 PERPQ96FX8 193 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 SESN1Q9Y6P5 492 aa13.4□□□□□ -0.26
USP4-201ENST00000265560 HSPB7Q9UBY9 170 aa13.39□□□□□ -0.27
USP4-201ENST00000265560 LIPFP07098 398 aa13.39□□□□□ -0.27
USP4-201ENST00000265560 SP5Q6BEB4 398 aaPredicted RBP13.39□□□□□ -0.27
USP4-201ENST00000265560 TGIF2LXQ8IUE1 241 aa13.39□□□□□ -0.27
USP4-201ENST00000265560 DTD1Q8TEA8 209 aa13.39□□□□□ -0.27
USP4-201ENST00000265560 RAB40CQ96S21 281 aa13.39□□□□□ -0.27
USP4-201ENST00000265560 OVOL3O00110 214 aa13.39□□□□□ -0.27
USP4-201ENST00000265560 RELBQ01201 579 aa13.39□□□□□ -0.27
USP4-201ENST00000265560 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.39□□□□□ -0.27
USP4-201ENST00000265560 NUP50Q9UKX7 468 aa13.39□□□□□ -0.27
USP4-201ENST00000265560 HILPDAQ9Y5L2 63 aa13.39□□□□□ -0.27
USP4-201ENST00000265560 HECTD1Q9ULT8 2610 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 ZNF705EA8MWA4 302 aaPredicted RBP13.38□□□□□ -0.27
USP4-201ENST00000265560 H0YJW9 148 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 JTBO76095 146 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 OR10A7Q8NGE5 316 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 OR4C12Q96R67 309 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 SLC25A31Q9H0C2 315 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 TAAR5O14804 337 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 ATG12O94817 140 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 AKR1C1Q04828 323 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 STX12Q86Y82 276 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 ST6GALNAC6Q969X2 333 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 PCGF1Q9BSM1 259 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 WSB1Q9Y6I7 421 aa13.38□□□□□ -0.27
USP4-201ENST00000265560 ANKRD34BA5PLL1 514 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 EIF3GO75821 320 aaKnown RBP eCLIP13.37□□□□□ -0.27
USP4-201ENST00000265560 RTL8BQ17RB0 113 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 LHFPL4Q7Z7J7 247 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 TCTEX1D1Q8N7M0 179 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 OR1S2Q8NGQ3 325 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 RAB39BQ96DA2 213 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 HARBI1Q96MB7 349 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 NABP2Q9BQ15 211 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 CLEC7AQ9BXN2 247 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 LINC00862A6NCI5 91 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 FAM157CP0CG43 387 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 SAA1P0DJI8 122 aaPredicted RBP13.37□□□□□ -0.27
USP4-201ENST00000265560 CNTFRP26992 372 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 ATP5J2P56134 94 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 HIST2H2BCQ6DN03 193 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 MOB3BQ86TA1 216 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 CLDND2Q8NHS1 167 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 COA4Q9NYJ1 87 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 GAB2Q9UQC2 676 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 NOTCH2Q04721 2471 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 CREBBPQ92793 2442 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 AGPAT2O15120 278 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 RBFOX2O43251 390 aaKnown RBP eCLIP13.37□□□□□ -0.273e-6■■■■□ 21.5
USP4-201ENST00000265560 PJVKQ0ZLH3 352 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 HRH4Q9H3N8 390 aa13.37□□□□□ -0.27
USP4-201ENST00000265560 TEX15Q9BXT5 2789 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 GPR37O15354 613 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 MED6O75586 246 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 APELAP0DMC3 54 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 RRASP10301 218 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 SULT1A1P50225 295 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 UBAC2Q8NBM4 344 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 C17orf50Q8WW18 174 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 HEYLQ9NQ87 328 aaPredicted RBP13.36□□□□□ -0.27
USP4-201ENST00000265560 TPSG1Q9NRR2 321 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 I3L521 148 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 IGLV1-47P01700 117 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 ARG1P05089 322 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 KRTAP10-9P60411 292 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 HLA-DRB5Q30154 266 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 SLC25A24Q6NUK1 477 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 TMEM182Q6ZP80 229 aaPredicted RBP13.36□□□□□ -0.27
USP4-201ENST00000265560 LHX4Q969G2 390 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 ADTRPQ96IZ2 230 aa13.36□□□□□ -0.27
USP4-201ENST00000265560 BORCS7-ASMTA0A0B4J1R7 106 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms