RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 RPS20P60866 119 aaKnown RBP11.43□□□□□ -0.58
LDLR-201ENST00000252444 OR4A47Q6IF82 309 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 ZNRF1Q8ND25 227 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 PRSS22Q9GZN4 317 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 HILPDAQ9Y5L2 63 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 RALGAPA1Q6GYQ0 2036 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 NBR2O15453 112 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 RPS10P46783 165 aaKnown RBP11.43□□□□□ -0.58
LDLR-201ENST00000252444 PLAURQ03405 335 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 GATAD1Q8WUU5 269 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 RBM14Q96PK6 669 aaKnown RBP11.43□□□□□ -0.58
LDLR-201ENST00000252444 IGLV3-9A0A075B6K5 115 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 LMO1P25800 156 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 FXYD3Q14802 87 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 FBXL19-AS1Q494R0 122 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 LY6G6FQ5SQ64 297 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 ZNF429Q86V71 674 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 BPIFA4PQ86YQ2 179 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 PLPPR1Q8TBJ4 325 aa11.43□□□□□ -0.58
LDLR-201ENST00000252444 ZG16O60844 167 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 NAPSAO96009 420 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 SSTR5P35346 364 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 ADIPOQQ15848 244 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 IZUMO4Q1ZYL8 232 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 SIGIRRQ6IA17 410 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 OR4X2Q8NGF9 303 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 PRR32B1ATL7 298 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 OR5I1Q13606 314 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 HERPUD1Q15011 391 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 TMEM255AQ5JRV8 349 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 Q6ZSR3 168 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 CEP290O15078 2479 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 F12P00748 615 aaPredicted RBP11.42□□□□□ -0.58
LDLR-201ENST00000252444 ZNF324BQ6AW86 544 aaPredicted RBP11.42□□□□□ -0.58
LDLR-201ENST00000252444 TPRX1Q8N7U7 411 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 LINC01356Q8N9X3 169 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 SAMD10Q9BYL1 202 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 FAM74A7A6NL05 159 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 UPK2O00526 184 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 PTBP3O95758 552 aaKnown RBP11.42□□□□□ -0.58
LDLR-201ENST00000252444 C7orf69Q9H7B7 122 aa11.42□□□□□ -0.58
LDLR-201ENST00000252444 C1QTNF9BB2RNN3 333 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 SLC25A17O43808 307 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 C1QTNF9P0C862 333 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 LOXL3P58215 753 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 OR8I2Q8N0Y5 310 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 SPOCK3Q9BQ16 436 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 DCTN5Q9BTE1 182 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 LRRC75BQ2VPJ9 315 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 TEX36Q5VZQ5 186 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 ARPC1AQ92747 370 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 C18orf12Q96KH6 178 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 SERTM2A0A1B0GWG4 89 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 SHISA3A0PJX4 238 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 FAM157AC9JC47 383 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 RAB5AP20339 215 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 PAXXQ9BUH6 204 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 GPR61Q9BZJ8 451 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 PXMP4Q9Y6I8 212 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 KNL1Q8NG31 2342 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 KNTC1P50748 2209 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 LINC00862A6NCI5 91 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 DPRXA6NFQ7 191 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 GATCO43716 136 aaKnown RBP11.41□□□□□ -0.58
LDLR-201ENST00000252444 IGLV3-1P01715 115 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 TSPOP30536 169 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 WDR25Q64LD2 544 aaPredicted RBP11.41□□□□□ -0.58
LDLR-201ENST00000252444 C8orf31Q8N9H6 132 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 TAF15Q92804 592 aaKnown RBP eCLIP11.41□□□□□ -0.58
LDLR-201ENST00000252444 C20orf24Q9BUV8 137 aa11.41□□□□□ -0.58
LDLR-201ENST00000252444 SFTA3P0C7M3 94 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 HKR1P10072 659 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 ORM2P19652 201 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 KRTAP27-1Q3LI81 207 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 FAM78BQ5VT40 261 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 SEC11CQ9BY50 192 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 ZNF319Q9P2F9 582 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 METRNQ9UJH8 293 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 TRAV39A0A0B4J263 110 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 CLDN34H7C241 214 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 OPN1MWP04001 364 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 OPN1MW2P0DN77 364 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 OPN1MW3P0DN78 364 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 RPEL1Q2QD12 228 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 PVRIGQ6DKI7 326 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 QRFPP83859 136 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 USF2Q15853 346 aaPredicted RBP11.4□□□□□ -0.58
LDLR-201ENST00000252444 BEND2Q8NDZ0 799 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 TLNRD1Q9H1K6 362 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 TNFRSF19Q9NS68 423 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 FAM215AQ9Y5M1 114 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 PAQR4Q8N4S7 273 aaPredicted RBP11.4□□□□□ -0.58
LDLR-201ENST00000252444 MOB4Q9Y3A3 225 aa11.4□□□□□ -0.58
LDLR-201ENST00000252444 RD3LP0DJH9 198 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 REG1BP48304 166 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 SRSF6Q13247 344 aaKnown RBP11.39□□□□□ -0.59
LDLR-201ENST00000252444 GAFA1Q96PS6 74 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 PEMTQ9UBM1 199 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 A0A1W2PRD5 423 aa11.39□□□□□ -0.59
LDLR-201ENST00000252444 A0A1W2PRF3 423 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 220.9 ms