RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TBC1D22AQ8WUA7 517 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 LARP6Q9BRS8 491 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 MRS2Q9HD23 443 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 TRIM37O94972 964 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 ITIH3Q06033 890 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 ZFPM2Q8WW38 1151 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 EFHD2Q96C19 240 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 CSRNP2Q9H175 543 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 KIAA1217Q5T5P2 1943 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 MTA2O94776 668 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 DDX10Q13206 875 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 DDI1Q8WTU0 396 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 DPF3Q92784 378 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 RILPL2Q969X0 211 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 TSR3Q9UJK0 312 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 MRPS23Q9Y3D9 190 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 GOLGA8SH3BPF8 625 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 CBFA2T2O43439 604 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 KRT14P02533 472 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 RASA1P20936 1047 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 PRIM1P49642 420 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 GNL2Q13823 731 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 WASHC4Q2M389 1173 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 TCERG1LQ5VWI1 586 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 PPP1R9BQ96SB3 815 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 HAUS7Q99871 368 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 IRF2BPLQ9H1B7 796 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 THRAP3Q9Y2W1 955 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 TSC22D4Q9Y3Q8 395 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 MUSKO15146 869 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 ATN1P54259 1190 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 DZIP3Q86Y13 1208 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 SLC4A4Q9Y6R1 1079 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 REC8O95072 547 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 CLUL1Q15846 466 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 ZNF365Q70YC5 407 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 UBR7Q8N806 425 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 TMC2Q8TDI7 906 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 ANKRD49Q8WVL7 239 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 PRPF31Q8WWY3 499 aaKnown RBP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 PIF1Q9H611 641 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 RTCAO00442 366 aaKnown RBP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 APOA4P06727 396 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 TNFAIP3P21580 790 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 KIF5AQ12840 1032 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 TCEAL1Q15170 157 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 SOGA3Q5TF21 947 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 TCEANC2Q96MN5 208 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 PPP1R12CQ9BZL4 782 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 GOLGA8MH3BSY2 632 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 NDUFB5O43674 189 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 GRK2P25098 689 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 PPP1R21Q6ZMI0 780 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 TAOK1Q7L7X3 1001 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 TRIM50Q86XT4 487 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 KIF18AQ8NI77 898 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 CEP250Q9BV73 2442 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 CENPAP49450 140 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 NEK5Q6P3R8 708 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC148Q8NFR7 591 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 NLRP4Q96MN2 994 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 HLTFQ14527 1009 aaKnown RBP eCLIP4.03□□□□□ -1.766e-7■■■■□ 22.5
SCN1A-221ENST00000641996 ZC4H2Q9NQZ6 224 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 PDE4DIPQ5VU43 2346 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 TRIM75PA6NK02 468 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 DNAJC6O75061 913 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 INAQ16352 499 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 RILPL1Q5EBL4 403 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 SPECC1LQ69YQ0 1117 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 ELOA2Q8IYF1 753 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 EHBP1Q8NDI1 1231 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 BICD2Q8TD16 824 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 ABCA7Q8IZY2 2146 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 GOLGA8JA6NMD2 632 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 GOLGA8TH3BQL2 631 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 RASA4O43374 803 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 ZEB2O60315 1214 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 GOLGA8HP0CJ92 632 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 KRT13P13646 458 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 GYS1P13807 737 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 MAP3K9P80192 1104 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 CEP135Q66GS9 1140 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 IL31Q6EBC2 164 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 SPATA21Q7Z572 469 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 CLIP2Q9UDT6 1046 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 TBC1D2BQ9UPU7 963 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 SLC20A2Q08357 652 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC30Q5VVM6 783 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 ISLR2Q6UXK2 745 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 SYT10Q6XYQ8 523 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 PIBF1Q8WXW3 757 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 APPBP2Q92624 585 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 PDGFDQ9GZP0 370 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 UBN1Q9NPG3 1134 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 DKK3Q9UBP4 350 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 COQ9O75208 318 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 BAG2O95816 211 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 HADHAP40939 763 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 TSHZ3Q63HK5 1081 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms