RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GNGT1P63211 74 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 SYCE1Q8N0S2 351 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 NEK11Q8NG66 645 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 DRC3Q9H069 523 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 GOLGA8QA0A0J9YX86 632 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 GOLGA8OA6NCC3 632 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 GOLGA8NF8WBI6 632 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 RBM6P78332 1123 aaKnown RBP5.24□□□□□ -1.57
SCN1A-220ENST00000641603 ZFYVE27Q5T4F4 411 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 SRLQ86TD4 932 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 HOOK2Q96ED9 719 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 NOX5Q96PH1 765 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 TTC21BQ7Z4L5 1316 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 TROVE2P10155 538 aaKnown RBP eCLIP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 PPP2R5BQ15173 497 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 GOPCQ9HD26 462 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SAR1BQ9Y6B6 198 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC169A6NNP5 214 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CTIFO43310 598 aaKnown RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CWC27Q6UX04 472 aaKnown RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 STAMBPL1Q96FJ0 436 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CALR3Q96L12 384 aaKnown RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 TSNARE1Q96NA8 513 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CARD6Q9BX69 1037 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 BIVM-ERCC5R4GMW8 1640 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 E7ENQ6 273 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 YY1P25490 414 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CNGA1P29973 690 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 WHAMMQ8TF30 809 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 UBAC1Q9BSL1 405 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 ZBTB40Q9NUA8 1239 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 NDUFA13Q9P0J0 144 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SGSM2O43147 1006 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 ELF1P32519 619 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SESN3P58005 492 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SEMA3FQ13275 785 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 RCSD1Q6JBY9 416 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC197Q8NCU1 140 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 ZNF830Q96NB3 372 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 FAM204AQ9H8W3 233 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CBX8Q9HC52 389 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 BAIAP2L1Q9UHR4 511 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 TTC21AQ8NDW8 1320 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SUN1O94901 812 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC122Q5T0U0 273 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SOGA3Q5TF21 947 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC63Q8NA47 563 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 FGFR1OP2Q9NVK5 253 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CHCHD3Q9NX63 227 aaKnown RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 ORC3Q9UBD5 711 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 A0A1W2PQ27 194 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 A0A1W2PQ64 194 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 A0A1W2PQD8 194 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 GMNNO75496 209 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 RHOXF2BP0C7M4 288 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 EIF2S2P20042 333 aaKnown RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SLC8A3P57103 927 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SSRP1Q08945 709 aaKnown RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 AACSQ86V21 672 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 RHOXF2Q9BQY4 288 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 ALDH1L1O75891 902 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CFAP157Q5JU67 520 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 TTC19Q6DKK2 380 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 TBC1D22AQ8WUA7 517 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 TCP11L1Q9NUJ3 509 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 ITSN2Q9NZM3 1697 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 ABCA5Q8WWZ7 1642 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 NUTM2FA1L443 756 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 MTIF2P46199 727 aaKnown RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 MRPS35P82673 323 aaKnown RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 NUTM2GQ5VZR2 741 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CAPRIN2Q6IMN6 1127 aaKnown RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 WWC3Q9ULE0 1092 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 PIK3R4Q99570 1358 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SDSP20132 328 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 TTF1Q15361 905 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SDCCAG8Q86SQ7 713 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 TMEM63CQ9P1W3 806 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 SUFUQ9UMX1 484 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 TRAK1Q9UPV9 953 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 PCDHB15Q9Y5E8 787 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 RASSF10A6NK89 507 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 RNF8O76064 485 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 LIG3P49916 1009 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 FANCCQ00597 558 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 PNMA8AQ86V59 439 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 RAB3IL1Q8TBN0 382 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC97Q96F63 343 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-220ENST00000641603 CNNM2Q9H8M5 875 aa5.23□□□□□ -1.57
SCN1A-220ENST00000641603 A0A0G2JS52 829 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 TARSL2A2RTX5 802 aaKnown RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 GSTA2P09210 222 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 VSIG1Q86XK7 387 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 SECISBP2LQ93073 1101 aaKnown RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 TRIM47Q96LD4 638 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 SPAG5Q96R06 1193 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 EID1Q9Y6B2 187 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 PHACTR2O75167 634 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 BIRC3Q13489 604 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 ST13P4Q8IZP2 240 aaPredicted RBP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms