RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DUOX1Q9NRD9 1551 aa20.08■□□□□ 0.8
CLN3-252ENST00000636907 IMMTQ16891 758 aaKnown RBP20.07■□□□□ 0.8
CLN3-252ENST00000636907 NAA16Q6N069 864 aaPredicted RBP20.07■□□□□ 0.8
CLN3-252ENST00000636907 MPNDQ8N594 471 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 NSUN4Q96CB9 384 aaKnown RBP20.07■□□□□ 0.8
CLN3-252ENST00000636907 TCEANC2Q96MN5 208 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 LIMCH1Q9UPQ0 1083 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 SALL1Q9NSC2 1324 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 MAST2Q6P0Q8 1798 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 E7EWF7 191 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 APPP05067 770 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 IL1R1P14778 569 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 PRDX5P30044 214 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 HAND2P61296 217 aa20.07■□□□□ 0.8
CLN3-252ENST00000636907 ZGPATQ8N5A5 531 aaKnown RBP20.07■□□□□ 0.8
CLN3-252ENST00000636907 ALDH8A1Q9H2A2 487 aaPredicted RBP20.07■□□□□ 0.8
CLN3-252ENST00000636907 LAMA4Q16363 1823 aa20.06■□□□□ 0.8
CLN3-252ENST00000636907 PATL2C9JE40 543 aaKnown RBP20.06■□□□□ 0.8
CLN3-252ENST00000636907 MECOMQ03112 1051 aa20.06■□□□□ 0.8
CLN3-252ENST00000636907 C10orf71Q711Q0 1435 aa20.06■□□□□ 0.8
CLN3-252ENST00000636907 WDR66Q8TBY9 1149 aa20.06■□□□□ 0.8
CLN3-252ENST00000636907 CIZ1Q9ULV3 898 aaPredicted RBP20.06■□□□□ 0.8
CLN3-252ENST00000636907 PRKAB2O43741 272 aa20.05■□□□□ 0.8
CLN3-252ENST00000636907 ALX1Q15699 326 aa20.05■□□□□ 0.8
CLN3-252ENST00000636907 EPB41L4AQ9HCS5 686 aaPredicted RBP20.05■□□□□ 0.8
CLN3-252ENST00000636907 MAGEB6P1A0A0J9YX57 407 aa20.04■□□□□ 0.8
CLN3-252ENST00000636907 GNAT2P19087 354 aa20.04■□□□□ 0.8
CLN3-252ENST00000636907 SPTY2D1Q68D10 685 aaPredicted RBP20.04■□□□□ 0.8
CLN3-252ENST00000636907 DPP8Q6V1X1 898 aaPredicted RBP20.04■□□□□ 0.8
CLN3-252ENST00000636907 RIOK1Q9BRS2 568 aaKnown RBP20.04■□□□□ 0.8
CLN3-252ENST00000636907 TMX4Q9H1E5 349 aaPredicted RBP20.04■□□□□ 0.8
CLN3-252ENST00000636907 SLC4A4Q9Y6R1 1079 aa20.04■□□□□ 0.8
CLN3-252ENST00000636907 ZMYM6O95789 1325 aa20.04■□□□□ 0.8
CLN3-252ENST00000636907 GSG1L2A8MUP6 293 aa20.03■□□□□ 0.8
CLN3-252ENST00000636907 ZNF213O14771 459 aa20.03■□□□□ 0.8
CLN3-252ENST00000636907 RIMBP2O15034 1052 aa20.03■□□□□ 0.8
CLN3-252ENST00000636907 IFNL3Q8IZI9 196 aa20.03■□□□□ 0.8
CLN3-252ENST00000636907 SLX4Q8IY92 1834 aa20.03■□□□□ 0.8
CLN3-252ENST00000636907 CCDC88AQ3V6T2 1871 aa20.03■□□□□ 0.8
CLN3-252ENST00000636907 LARGE1O95461 756 aa20.03■□□□□ 0.8
CLN3-252ENST00000636907 HMGB1P09429 215 aaKnown RBP20.03■□□□□ 0.8
CLN3-252ENST00000636907 DYNLL1P63167 89 aaKnown RBP20.03■□□□□ 0.8
CLN3-252ENST00000636907 TOB2Q14106 344 aaPredicted RBP20.03■□□□□ 0.8
CLN3-252ENST00000636907 CNKSR1Q969H4 720 aa20.03■□□□□ 0.8
CLN3-252ENST00000636907 INTS4Q96HW7 963 aaKnown RBP20.03■□□□□ 0.8
CLN3-252ENST00000636907 NBPF3Q9H094 633 aa20.03■□□□□ 0.8
CLN3-252ENST00000636907 CWC22Q9HCG8 908 aaKnown RBP20.03■□□□□ 0.8
CLN3-252ENST00000636907 ANKRD1Q15327 319 aa20.02■□□□□ 0.8
CLN3-252ENST00000636907 DHX32Q7L7V1 743 aaKnown RBP20.02■□□□□ 0.8
CLN3-252ENST00000636907 ZSCAN31Q96LW9 406 aaPredicted RBP20.02■□□□□ 0.8
CLN3-252ENST00000636907 NAPBQ9H115 298 aa20.02■□□□□ 0.8
CLN3-252ENST00000636907 TPCN1Q9ULQ1 816 aa20.02■□□□□ 0.8
CLN3-252ENST00000636907 LDHBP07195 334 aaKnown RBP20.01■□□□□ 0.79
CLN3-252ENST00000636907 NBR1Q14596 966 aa20.01■□□□□ 0.79
CLN3-252ENST00000636907 GRIK5Q16478 980 aa20.01■□□□□ 0.79
CLN3-252ENST00000636907 TMED8Q6PL24 325 aaPredicted RBP20.01■□□□□ 0.79
CLN3-252ENST00000636907 Q6ZUG5 572 aa20.01■□□□□ 0.79
CLN3-252ENST00000636907 DZIP1Q86YF9 867 aaKnown RBP20.01■□□□□ 0.79
CLN3-252ENST00000636907 ANP32EQ9BTT0 268 aa20.01■□□□□ 0.79
CLN3-252ENST00000636907 ZC3H12CQ9C0D7 883 aaKnown RBP20.01■□□□□ 0.79
CLN3-252ENST00000636907 KIAA1551Q9HCM1 1747 aa20.01■□□□□ 0.79
CLN3-252ENST00000636907 IGSF3O75054 1194 aa20■□□□□ 0.79
CLN3-252ENST00000636907 EXOSC10Q01780 885 aaKnown RBP20■□□□□ 0.79
CLN3-252ENST00000636907 NFKBIBQ15653 356 aa20■□□□□ 0.79
CLN3-252ENST00000636907 ME3Q16798 604 aa20■□□□□ 0.79
CLN3-252ENST00000636907 TBC1D10CQ8IV04 446 aa20■□□□□ 0.79
CLN3-252ENST00000636907 COA1Q9GZY4 146 aa20■□□□□ 0.79
CLN3-252ENST00000636907 SDR42E1Q8WUS8 393 aa20■□□□□ 0.79
CLN3-252ENST00000636907 LRRC2Q9BYS8 371 aa20■□□□□ 0.79
CLN3-252ENST00000636907 NACAP1Q9BZK3 213 aa20■□□□□ 0.79
CLN3-252ENST00000636907 SH2B1Q9NRF2 756 aaPredicted RBP20■□□□□ 0.79
CLN3-252ENST00000636907 ZNF219Q9P2Y4 722 aaPredicted RBP20■□□□□ 0.79
CLN3-252ENST00000636907 DLEC1Q9Y238 1755 aa20■□□□□ 0.79
CLN3-252ENST00000636907 ZBTB7AO95365 584 aa19.99■□□□□ 0.79
CLN3-252ENST00000636907 TDO2P48775 406 aa19.99■□□□□ 0.79
CLN3-252ENST00000636907 AATFQ9NY61 560 aaKnown RBP eCLIP19.99■□□□□ 0.79
CLN3-252ENST00000636907 FAM205AQ6ZU69 1335 aa19.98■□□□□ 0.79
CLN3-252ENST00000636907 ST3GAL1Q11201 340 aa19.98■□□□□ 0.79
CLN3-252ENST00000636907 RAB3GAP1Q15042 981 aa19.98■□□□□ 0.79
CLN3-252ENST00000636907 MB21D2Q8IYB1 491 aaPredicted RBP19.98■□□□□ 0.79
CLN3-252ENST00000636907 C7orf43Q8WVR3 580 aa19.98■□□□□ 0.79
CLN3-252ENST00000636907 EYA3Q99504 573 aa19.98■□□□□ 0.79
CLN3-252ENST00000636907 CHST3Q7LGC8 479 aa19.97■□□□□ 0.79
CLN3-252ENST00000636907 CCDC83Q8IWF9 413 aa19.97■□□□□ 0.79
CLN3-252ENST00000636907 NCOA7Q8NI08 942 aa19.97■□□□□ 0.79
CLN3-252ENST00000636907 CHD4Q14839 1912 aa19.97■□□□□ 0.79
CLN3-252ENST00000636907 TIAM2Q8IVF5 1701 aa19.97■□□□□ 0.79
CLN3-252ENST00000636907 GSTO1P78417 241 aa19.97■□□□□ 0.79
CLN3-252ENST00000636907 DOK7Q18PE1 504 aa19.97■□□□□ 0.79
CLN3-252ENST00000636907 MFSD14BQ5SR56 506 aa19.97■□□□□ 0.79
CLN3-252ENST00000636907 RALYLQ86SE5 291 aaKnown RBP19.97■□□□□ 0.79
CLN3-252ENST00000636907 AGXT2Q9BYV1 514 aa19.97■□□□□ 0.79
CLN3-252ENST00000636907 SNED1Q8TER0 1413 aa19.96■□□□□ 0.79
CLN3-252ENST00000636907 GTF2IP78347 998 aa19.96■□□□□ 0.79
CLN3-252ENST00000636907 FGD1P98174 961 aa19.96■□□□□ 0.79
CLN3-252ENST00000636907 DIXDC1Q155Q3 683 aa19.96■□□□□ 0.79
CLN3-252ENST00000636907 NECAB1Q8N987 351 aa19.96■□□□□ 0.79
CLN3-252ENST00000636907 TBC1D22AQ8WUA7 517 aa19.96■□□□□ 0.79
CLN3-252ENST00000636907 BRF1Q92994 677 aa19.96■□□□□ 0.79
CLN3-252ENST00000636907 RTFDC1Q9BY42 306 aaPredicted RBP19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms