RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 CAVIN4Q5BKX8 364 aa19.86■□□□□ 0.77
PNKP-222ENST00000629088 METTL24Q5JXM2 366 aa19.86■□□□□ 0.77
PNKP-222ENST00000629088 TBC1D22AQ8WUA7 517 aa19.86■□□□□ 0.77
PNKP-222ENST00000629088 TTF2Q9UNY4 1162 aaKnown RBP19.86■□□□□ 0.77
PNKP-222ENST00000629088 HDLBPQ00341 1268 aaKnown RBP19.85■□□□□ 0.77
PNKP-222ENST00000629088 RASA3Q14644 834 aa19.85■□□□□ 0.77
PNKP-222ENST00000629088 SPDYE2Q495Y8 402 aa19.85■□□□□ 0.77
PNKP-222ENST00000629088 OTOP1Q7RTM1 612 aa19.85■□□□□ 0.77
PNKP-222ENST00000629088 VPS37DQ86XT2 251 aa19.85■□□□□ 0.77
PNKP-222ENST00000629088 TRMT2AQ8IZ69 625 aaKnown RBP19.85■□□□□ 0.77
PNKP-222ENST00000629088 IREB2P48200 963 aaKnown RBP19.84■□□□□ 0.77
PNKP-222ENST00000629088 LRRC24Q50LG9 513 aa19.84■□□□□ 0.77
PNKP-222ENST00000629088 LAMB1P07942 1786 aa19.84■□□□□ 0.77
PNKP-222ENST00000629088 DZIP1LQ8IYY4 767 aaKnown RBP19.83■□□□□ 0.77
PNKP-222ENST00000629088 SMC4Q9NTJ3 1288 aa19.83■□□□□ 0.77
PNKP-222ENST00000629088 ZNF70Q9UC06 446 aaPredicted RBP19.83■□□□□ 0.77
PNKP-222ENST00000629088 MKI67P46013 3256 aaKnown RBP19.82■□□□□ 0.76
PNKP-222ENST00000629088 CRHR2Q13324 411 aa19.82■□□□□ 0.76
PNKP-222ENST00000629088 PUM3Q15397 648 aaKnown RBP19.82■□□□□ 0.76
PNKP-222ENST00000629088 PTPN18Q99952 460 aa19.82■□□□□ 0.76
PNKP-222ENST00000629088 MRIQ9BWK5 157 aa19.82■□□□□ 0.76
PNKP-222ENST00000629088 SUGT1Q9Y2Z0 365 aa19.82■□□□□ 0.76
PNKP-222ENST00000629088 CENPFP49454 3210 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 IFIT1P09914 478 aaKnown RBP19.81■□□□□ 0.76
PNKP-222ENST00000629088 FGFR2P21802 821 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 CRKP46108 304 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 TNNI2P48788 182 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 OTUD7BQ6GQQ9 843 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 ANKRD13AQ8IZ07 590 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 CD99L2Q8TCZ2 262 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 CDCA7LQ96GN5 454 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 ERO1AQ96HE7 468 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 FBXO3Q9UK99 471 aa19.81■□□□□ 0.76
PNKP-222ENST00000629088 TESPA1A2RU30 521 aaPredicted RBP19.8■□□□□ 0.76
PNKP-222ENST00000629088 POTEFA5A3E0 1075 aa19.8■□□□□ 0.76
PNKP-222ENST00000629088 EYA2O00167 538 aa19.8■□□□□ 0.76
PNKP-222ENST00000629088 FRAT2O75474 233 aaPredicted RBP19.8■□□□□ 0.76
PNKP-222ENST00000629088 CDAN1Q8IWY9 1227 aa19.8■□□□□ 0.76
PNKP-222ENST00000629088 TDRD3Q9H7E2 651 aaKnown RBP19.8■□□□□ 0.76
PNKP-222ENST00000629088 ELP3Q9H9T3 547 aa19.8■□□□□ 0.76
PNKP-222ENST00000629088 HDAC5Q9UQL6 1122 aa19.8■□□□□ 0.76
PNKP-222ENST00000629088 PTPN22Q9Y2R2 807 aa19.8■□□□□ 0.76
PNKP-222ENST00000629088 MAST3O60307 1309 aa19.79■□□□□ 0.76
PNKP-222ENST00000629088 CCER2I3L3R5 266 aa19.79■□□□□ 0.76
PNKP-222ENST00000629088 RFX5P48382 616 aaPredicted RBP19.79■□□□□ 0.76
PNKP-222ENST00000629088 CAP1Q01518 475 aa19.79■□□□□ 0.76
PNKP-222ENST00000629088 INTS3Q68E01 1043 aaKnown RBP19.79■□□□□ 0.76
PNKP-222ENST00000629088 KLHDC4Q8TBB5 520 aa19.79■□□□□ 0.76
PNKP-222ENST00000629088 OPTNQ96CV9 577 aa19.79■□□□□ 0.76
PNKP-222ENST00000629088 TEPSINQ96N21 525 aa19.79■□□□□ 0.76
PNKP-222ENST00000629088 UBTFL1P0CB47 393 aaPredicted RBP19.78■□□□□ 0.76
PNKP-222ENST00000629088 LPIN2Q92539 896 aa19.78■□□□□ 0.76
PNKP-222ENST00000629088 TEKT1Q969V4 418 aa19.78■□□□□ 0.76
PNKP-222ENST00000629088 ZDHHC15Q96MV8 337 aa19.78■□□□□ 0.76
PNKP-222ENST00000629088 API5Q9BZZ5 524 aaKnown RBP19.78■□□□□ 0.76
PNKP-222ENST00000629088 EFCC1Q9HA90 598 aa19.78■□□□□ 0.76
PNKP-222ENST00000629088 TCP10L2B9ZVM9 353 aa19.77■□□□□ 0.76
PNKP-222ENST00000629088 CIAO1O76071 339 aa19.77■□□□□ 0.76
PNKP-222ENST00000629088 SLC5A1P13866 664 aa19.77■□□□□ 0.76
PNKP-222ENST00000629088 BCAMP50895 628 aa19.77■□□□□ 0.76
PNKP-222ENST00000629088 SP3Q02447 781 aa19.77■□□□□ 0.76
PNKP-222ENST00000629088 CHAF1AQ13111 956 aaPredicted RBP19.77■□□□□ 0.76
PNKP-222ENST00000629088 FKBP1CQ5VVH2 108 aa19.77■□□□□ 0.76
PNKP-222ENST00000629088 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.77■□□□□ 0.76
PNKP-222ENST00000629088 CNKSR2Q8WXI2 1034 aa19.77■□□□□ 0.76
PNKP-222ENST00000629088 MS4A4AQ96JQ5 239 aa19.77■□□□□ 0.76
PNKP-222ENST00000629088 IQSEC3Q9UPP2 1182 aaPredicted RBP19.77■□□□□ 0.76
PNKP-222ENST00000629088 GRIK5Q16478 980 aa19.76■□□□□ 0.75
PNKP-222ENST00000629088 TMEM39BQ9GZU3 492 aa19.76■□□□□ 0.75
PNKP-222ENST00000629088 BRCA2P51587 3418 aa19.75■□□□□ 0.75
PNKP-222ENST00000629088 ZBTB22O15209 634 aa19.75■□□□□ 0.75
PNKP-222ENST00000629088 HHIPL2Q6UWX4 724 aa19.75■□□□□ 0.75
PNKP-222ENST00000629088 ATG9AQ7Z3C6 839 aa19.75■□□□□ 0.75
PNKP-222ENST00000629088 FAM83AQ86UY5 434 aa19.75■□□□□ 0.75
PNKP-222ENST00000629088 WDR66Q8TBY9 1149 aa19.75■□□□□ 0.75
PNKP-222ENST00000629088 BRI3BPQ8WY22 251 aa19.75■□□□□ 0.75
PNKP-222ENST00000629088 ARMC5Q96C12 935 aa19.75■□□□□ 0.75
PNKP-222ENST00000629088 TMOD2Q9NZR1 351 aa19.75■□□□□ 0.75
PNKP-222ENST00000629088 NOB1Q9ULX3 412 aaKnown RBP19.75■□□□□ 0.75
PNKP-222ENST00000629088 OTOFQ9HC10 1997 aa19.74■□□□□ 0.75
PNKP-222ENST00000629088 EN2P19622 333 aaPredicted RBP19.74■□□□□ 0.75
PNKP-222ENST00000629088 MAP3K9P80192 1104 aa19.74■□□□□ 0.75
PNKP-222ENST00000629088 VGLL4Q14135 290 aa19.74■□□□□ 0.75
PNKP-222ENST00000629088 HOOK2Q96ED9 719 aa19.74■□□□□ 0.75
PNKP-222ENST00000629088 RPAP1Q9BWH6 1393 aaPredicted RBP19.73■□□□□ 0.75
PNKP-222ENST00000629088 APOBEC3HQ6NTF7 200 aaKnown RBP19.73■□□□□ 0.75
PNKP-222ENST00000629088 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.73■□□□□ 0.75
PNKP-222ENST00000629088 ARHGAP45Q92619 1136 aa19.73■□□□□ 0.75
PNKP-222ENST00000629088 GCC1Q96CN9 775 aa19.73■□□□□ 0.75
PNKP-222ENST00000629088 CCL15-CCL14A0A0B4J2E2 113 aa19.72■□□□□ 0.75
PNKP-222ENST00000629088 IL15P40933 162 aaPredicted RBP19.72■□□□□ 0.75
PNKP-222ENST00000629088 GTF2A2P52657 109 aa19.72■□□□□ 0.75
PNKP-222ENST00000629088 CCL15Q16663 113 aa19.72■□□□□ 0.75
PNKP-222ENST00000629088 CEP126Q9P2H0 1117 aa19.72■□□□□ 0.75
PNKP-222ENST00000629088 SEMA3EO15041 775 aa19.71■□□□□ 0.75
PNKP-222ENST00000629088 RARSP54136 660 aaKnown RBP19.71■□□□□ 0.75
PNKP-222ENST00000629088 CACNB3P54284 484 aa19.71■□□□□ 0.75
PNKP-222ENST00000629088 TAF1CQ15572 869 aaPredicted RBP19.71■□□□□ 0.75
PNKP-222ENST00000629088 FAM43AQ8N2R8 423 aa19.71■□□□□ 0.75
PNKP-222ENST00000629088 OTUD5Q96G74 571 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms