RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 ZNF445P59923 1031 aa23.19■■□□□ 1.3
CHRNA4-209ENST00000627000 EPB41L4AQ9HCS5 686 aaPredicted RBP23.19■■□□□ 1.3
CHRNA4-209ENST00000627000 LRP2BPQ9P2M1 347 aa23.19■■□□□ 1.3
CHRNA4-209ENST00000627000 FAM173BQ6P4H8 233 aa23.18■■□□□ 1.3
CHRNA4-209ENST00000627000 NSUN7Q8NE18 718 aaKnown RBP23.18■■□□□ 1.3
CHRNA4-209ENST00000627000 SMARCC2Q8TAQ2 1214 aa23.18■■□□□ 1.3
CHRNA4-209ENST00000627000 FAM84BQ96KN1 310 aaPredicted RBP23.18■■□□□ 1.3
CHRNA4-209ENST00000627000 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.18■■□□□ 1.3
CHRNA4-209ENST00000627000 NPHP1O15259 732 aa23.18■■□□□ 1.3
CHRNA4-209ENST00000627000 MCM5P33992 734 aa23.18■■□□□ 1.3
CHRNA4-209ENST00000627000 TPRNQ4KMQ1 711 aa23.18■■□□□ 1.3
CHRNA4-209ENST00000627000 RALYLQ86SE5 291 aaKnown RBP23.18■■□□□ 1.3
CHRNA4-209ENST00000627000 PRKAB2O43741 272 aa23.17■■□□□ 1.3
CHRNA4-209ENST00000627000 LCORLQ8N3X6 602 aa23.17■■□□□ 1.3
CHRNA4-209ENST00000627000 FBXL16Q8N461 479 aa23.17■■□□□ 1.3
CHRNA4-209ENST00000627000 ZNF274Q96GC6 653 aaPredicted RBP23.17■■□□□ 1.3
CHRNA4-209ENST00000627000 ABCF2Q9UG63 623 aa23.17■■□□□ 1.3
CHRNA4-209ENST00000627000 UBR3Q6ZT12 1888 aa23.17■■□□□ 1.3
CHRNA4-209ENST00000627000 PPFIA3O75145 1194 aa23.17■■□□□ 1.3
CHRNA4-209ENST00000627000 SLC51AQ86UW1 340 aa23.17■■□□□ 1.3
CHRNA4-209ENST00000627000 MIGA1Q8NAN2 632 aa23.17■■□□□ 1.3
CHRNA4-209ENST00000627000 PATL2C9JE40 543 aaKnown RBP23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 TRIM37O94972 964 aa23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 CAVIN4Q5BKX8 364 aa23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 IFNL3Q8IZI9 196 aa23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 LLPHQ9BRT6 129 aaKnown RBP23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 GNL3LQ9NVN8 582 aaKnown RBP23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 CARMIL3Q8ND23 1372 aa23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 PTPDC1A2A3K4 754 aa23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 KRT27Q7Z3Y8 459 aa23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 ADGRA1Q86SQ6 560 aa23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 VPS37DQ86XT2 251 aa23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 INCENPQ9NQS7 918 aa23.16■■□□□ 1.3
CHRNA4-209ENST00000627000 PDIA4P13667 645 aaKnown RBP23.15■■□□□ 1.3
CHRNA4-209ENST00000627000 EVCP57679 992 aa23.15■■□□□ 1.3
CHRNA4-209ENST00000627000 GSG1L2A8MUP6 293 aa23.14■■□□□ 1.3
CHRNA4-209ENST00000627000 ALX1Q15699 326 aa23.14■■□□□ 1.3
CHRNA4-209ENST00000627000 CYB5R4Q7L1T6 521 aa23.14■■□□□ 1.3
CHRNA4-209ENST00000627000 FAM184AQ8NB25 1140 aa23.14■■□□□ 1.3
CHRNA4-209ENST00000627000 SYCE3A1L190 88 aa23.14■■□□□ 1.29
CHRNA4-209ENST00000627000 CYP7A1P22680 504 aa23.14■■□□□ 1.29
CHRNA4-209ENST00000627000 RAB11FIP4Q86YS3 637 aa23.14■■□□□ 1.29
CHRNA4-209ENST00000627000 NAPBQ9H115 298 aa23.14■■□□□ 1.29
CHRNA4-209ENST00000627000 TFCP2L1Q9NZI6 479 aa23.14■■□□□ 1.29
CHRNA4-209ENST00000627000 FOSBP53539 338 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 TRDNQ13061 729 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 FBXO33Q7Z6M2 555 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 RAI14Q9P0K7 980 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 NEDD4P46934 1319 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 KLF18A0A0U1RQI7 1052 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 B4E1Z4 1266 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 CTDSPL2Q05D32 466 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 CNBD1Q8NA66 436 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 TACC3Q9Y6A5 838 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 SLC4A4Q9Y6R1 1079 aa23.13■■□□□ 1.29
CHRNA4-209ENST00000627000 SALL1Q9NSC2 1324 aa23.12■■□□□ 1.29
CHRNA4-209ENST00000627000 ADRA2BP18089 450 aa23.12■■□□□ 1.29
CHRNA4-209ENST00000627000 ZMYM6O95789 1325 aa23.12■■□□□ 1.29
CHRNA4-209ENST00000627000 PNPLA7Q6ZV29 1317 aa23.12■■□□□ 1.29
CHRNA4-209ENST00000627000 CACNA1SQ13698 1873 aa23.12■■□□□ 1.29
CHRNA4-209ENST00000627000 UBE2HP62256 183 aa23.11■■□□□ 1.29
CHRNA4-209ENST00000627000 ANKRD2Q9GZV1 360 aa23.11■■□□□ 1.29
CHRNA4-209ENST00000627000 HPS5Q9UPZ3 1129 aa23.11■■□□□ 1.29
CHRNA4-209ENST00000627000 CHD4Q14839 1912 aa23.11■■□□□ 1.29
CHRNA4-209ENST00000627000 WDR19Q8NEZ3 1342 aa23.11■■□□□ 1.29
CHRNA4-209ENST00000627000 GYS1P13807 737 aa23.11■■□□□ 1.29
CHRNA4-209ENST00000627000 TXNRD3Q86VQ6 643 aa23.11■■□□□ 1.29
CHRNA4-209ENST00000627000 H3BQV1 296 aa23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 HMGN5P82970 282 aaKnown RBP23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 IFFO2Q5TF58 517 aa23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 PRR5LQ6MZQ0 368 aa23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 MYH13Q9UKX3 1938 aa23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 GOLGA8BA8MQT2 603 aa23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 KRT85P78386 507 aa23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 RESTQ13127 1097 aa23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 TTC6Q86TZ1 520 aa23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 ZNF384Q8TF68 577 aa23.1■■□□□ 1.29
CHRNA4-209ENST00000627000 SLC27A3Q5K4L6 730 aa23.09■■□□□ 1.29
CHRNA4-209ENST00000627000 TFIP11Q9UBB9 837 aaKnown RBP23.09■■□□□ 1.29
CHRNA4-209ENST00000627000 FDPSP14324 419 aaKnown RBP23.08■■□□□ 1.29
CHRNA4-209ENST00000627000 GNAT2P19087 354 aa23.08■■□□□ 1.29
CHRNA4-209ENST00000627000 HIBADHP31937 336 aaKnown RBP23.08■■□□□ 1.29
CHRNA4-209ENST00000627000 TDO2P48775 406 aa23.08■■□□□ 1.29
CHRNA4-209ENST00000627000 LRSAM1Q6UWE0 723 aa23.08■■□□□ 1.29
CHRNA4-209ENST00000627000 SENP2Q9HC62 589 aa23.08■■□□□ 1.29
CHRNA4-209ENST00000627000 CSPP1Q1MSJ5 1256 aa23.08■■□□□ 1.29
CHRNA4-209ENST00000627000 SDR42E1Q8WUS8 393 aa23.08■■□□□ 1.29
CHRNA4-209ENST00000627000 RBSNQ9H1K0 784 aa23.08■■□□□ 1.29
CHRNA4-209ENST00000627000 SH2B2O14492 632 aaPredicted RBP23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 GRAPQ13588 217 aa23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 PROM2Q8N271 834 aa23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 GRAPLQ8TC17 118 aaPredicted RBP23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 ANGEL1Q9UNK9 670 aaKnown RBP23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 TIAM2Q8IVF5 1701 aa23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 MAGEB6P1A0A0J9YX57 407 aa23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 DYNLL1P63167 89 aaKnown RBP23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 STK11IPQ8N1F8 1099 aa23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 SYAP1Q96A49 352 aaPredicted RBP23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 NACAP1Q9BZK3 213 aa23.07■■□□□ 1.28
CHRNA4-209ENST00000627000 RIOK1Q9BRS2 568 aaKnown RBP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms