RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 AHDC1Q5TGY3 1603 aaPredicted RBP12.46□□□□□ -0.41
VPS11-208ENST00000621676 MROH5Q6ZUA9 1318 aa12.46□□□□□ -0.41
VPS11-208ENST00000621676 CDHR2Q9BYE9 1310 aa12.46□□□□□ -0.41
VPS11-208ENST00000621676 PANK2Q9BZ23 570 aa12.46□□□□□ -0.41
VPS11-208ENST00000621676 GNL3LQ9NVN8 582 aaKnown RBP12.46□□□□□ -0.41
VPS11-208ENST00000621676 DOT1LQ8TEK3 1739 aa12.46□□□□□ -0.41
VPS11-208ENST00000621676 USP17L8P0C7I0 530 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 RPS6KB1P23443 525 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 ADD2P35612 726 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 TOB2Q14106 344 aaPredicted RBP12.46□□□□□ -0.42
VPS11-208ENST00000621676 CAMK4Q16566 473 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 CDC37L1Q7L3B6 337 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 RASGRP2Q7LDG7 609 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 TGFBRAP1Q8WUH2 860 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 BSDC1Q9NW68 430 aaPredicted RBP12.46□□□□□ -0.42
VPS11-208ENST00000621676 MCM9Q9NXL9 1143 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 POLLQ9UGP5 575 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 U3KPZ7 1027 aaPredicted RBP12.46□□□□□ -0.42
VPS11-208ENST00000621676 GLI3P10071 1580 aa12.46□□□□□ -0.42
VPS11-208ENST00000621676 GOLGA8BA8MQT2 603 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 PSMA5P28066 241 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 MECOMQ03112 1051 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 CLEC10AQ8IUN9 316 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 GBP4Q96PP9 640 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 USP5P45974 858 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 R3HDM1Q15032 1099 aaKnown RBP12.45□□□□□ -0.42
VPS11-208ENST00000621676 PLA2G12BQ9BX93 195 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 IFIT3O14879 490 aaKnown RBP12.45□□□□□ -0.42
VPS11-208ENST00000621676 FOXP2O15409 715 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 ST3GAL1Q11201 340 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 MFSD14BQ5SR56 506 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 IFNL3Q8IZI9 196 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 ITGB4P16144 1822 aa12.45□□□□□ -0.42
VPS11-208ENST00000621676 GOLGA6L22H0YM25 854 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 TM4SF1P30408 202 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 ZC3H12CQ9C0D7 883 aaKnown RBP12.44□□□□□ -0.42
VPS11-208ENST00000621676 AOX1Q06278 1338 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 RIC1Q4ADV7 1423 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 CRYBG1Q9Y4K1 1723 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 MAGEB6P1A0A0J9YX57 407 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 SCRN1Q12765 414 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 CYB5R4Q7L1T6 521 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 C2CD5Q86YS7 1000 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 ZSCAN29Q8IWY8 852 aaPredicted RBP12.44□□□□□ -0.42
VPS11-208ENST00000621676 TMX4Q9H1E5 349 aaPredicted RBP12.44□□□□□ -0.42
VPS11-208ENST00000621676 ZSWIM6Q9HCJ5 1215 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 EPB41L4AQ9HCS5 686 aaPredicted RBP12.44□□□□□ -0.42
VPS11-208ENST00000621676 ABCA3Q99758 1704 aa12.44□□□□□ -0.42
VPS11-208ENST00000621676 PARP4Q9UKK3 1724 aaKnown RBP12.44□□□□□ -0.42
VPS11-208ENST00000621676 AFDNP55196 1824 aaKnown RBP12.44□□□□□ -0.42
VPS11-208ENST00000621676 CNTNAP4Q9C0A0 1308 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 FGFR2P21802 821 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 STRBPQ96SI9 672 aaKnown RBP12.43□□□□□ -0.42
VPS11-208ENST00000621676 VAT1LQ9HCJ6 419 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 STX6O43752 255 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 RAD17O75943 681 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 UQCRFS1P1P0C7P4 283 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 RAB3GAP1Q15042 981 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 TTC14Q96N46 770 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 STX8Q9UNK0 236 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 NEDD4P46934 1319 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 COL4A1P02462 1669 aa12.43□□□□□ -0.42
VPS11-208ENST00000621676 TMEM67Q5HYA8 995 aa12.42□□□□□ -0.42
VPS11-208ENST00000621676 ZNF384Q8TF68 577 aa12.42□□□□□ -0.42
VPS11-208ENST00000621676 ZSWIM5Q9P217 1185 aa12.42□□□□□ -0.42
VPS11-208ENST00000621676 GGA1Q9UJY5 639 aa12.42□□□□□ -0.42
VPS11-208ENST00000621676 POLRMTO00411 1230 aaKnown RBP12.42□□□□□ -0.42
VPS11-208ENST00000621676 DPP8Q6V1X1 898 aaPredicted RBP12.42□□□□□ -0.42
VPS11-208ENST00000621676 DHX32Q7L7V1 743 aaKnown RBP12.42□□□□□ -0.42
VPS11-208ENST00000621676 IL27Q8NEV9 243 aa12.42□□□□□ -0.42
VPS11-208ENST00000621676 ZBTB12Q9Y330 459 aaPredicted RBP12.42□□□□□ -0.42
VPS11-208ENST00000621676 TACC3Q9Y6A5 838 aa12.42□□□□□ -0.42
VPS11-208ENST00000621676 PLCH1Q4KWH8 1693 aa12.42□□□□□ -0.42
VPS11-208ENST00000621676 USP54Q70EL1 1684 aa12.42□□□□□ -0.42
VPS11-208ENST00000621676 GRAPQ13588 217 aa12.42□□□□□ -0.42
VPS11-208ENST00000621676 GNL2Q13823 731 aaKnown RBP12.42□□□□□ -0.42
VPS11-208ENST00000621676 SF3B3Q15393 1217 aaKnown RBP12.42□□□□□ -0.42
VPS11-208ENST00000621676 GRAPLQ8TC17 118 aaPredicted RBP12.42□□□□□ -0.42
VPS11-208ENST00000621676 SYCE3A1L190 88 aa12.41□□□□□ -0.42
VPS11-208ENST00000621676 LDHBP07195 334 aaKnown RBP12.41□□□□□ -0.42
VPS11-208ENST00000621676 HELLSQ9NRZ9 838 aa12.41□□□□□ -0.42
VPS11-208ENST00000621676 CEP350Q5VT06 3117 aa12.41□□□□□ -0.42
VPS11-208ENST00000621676 PKD1L3Q7Z443 1732 aa12.41□□□□□ -0.42
VPS11-208ENST00000621676 GSG1L2A8MUP6 293 aa12.41□□□□□ -0.42
VPS11-208ENST00000621676 RC3H1Q5TC82 1133 aaKnown RBP12.41□□□□□ -0.42
VPS11-208ENST00000621676 MFSD6Q6ZSS7 791 aa12.41□□□□□ -0.42
VPS11-208ENST00000621676 ONECUT3O60422 494 aaPredicted RBP12.4□□□□□ -0.42
VPS11-208ENST00000621676 GOLGA8HP0CJ92 632 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 AOC3Q16853 763 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 USP48Q86UV5 1035 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 SH3RF3Q8TEJ3 882 aaPredicted RBP12.4□□□□□ -0.42
VPS11-208ENST00000621676 STK32BQ9NY57 414 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 DHX16O60231 1041 aaKnown RBP12.4□□□□□ -0.42
VPS11-208ENST00000621676 GPR108Q9NPR9 543 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 CACNA1FO60840 1977 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 PTPDC1A2A3K4 754 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 GOLGA6L4A6NEF3 574 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 ANAPC15P60006 121 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 NUCB2P80303 420 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 TTF1Q15361 905 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms