RNA–Protein interactions for RNA: ENST00000620675.4

NEK3-210, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-210ENST00000620675 TBC1D22AQ8WUA7 517 aa16.6■□□□□ 0.25
NEK3-210ENST00000620675 L3MBTL3Q96JM7 780 aaPredicted RBP16.6■□□□□ 0.25
NEK3-210ENST00000620675 FKBP1AP62942 108 aaKnown RBP16.6■□□□□ 0.25
NEK3-210ENST00000620675 TRPM4Q8TD43 1214 aa16.6■□□□□ 0.25
NEK3-210ENST00000620675 RRAGCQ9HB90 399 aa16.6■□□□□ 0.25
NEK3-210ENST00000620675 CDK5RAP2Q96SN8 1893 aa16.6■□□□□ 0.25
NEK3-210ENST00000620675 ECM29Q5VYK3 1845 aa16.59■□□□□ 0.25
NEK3-210ENST00000620675 ERC2O15083 957 aa16.59■□□□□ 0.25
NEK3-210ENST00000620675 IDH1O75874 414 aaKnown RBP16.59■□□□□ 0.25
NEK3-210ENST00000620675 LDHBP07195 334 aaKnown RBP16.59■□□□□ 0.25
NEK3-210ENST00000620675 USP17L8P0C7I0 530 aa16.59■□□□□ 0.25
NEK3-210ENST00000620675 YY1P25490 414 aa16.59■□□□□ 0.25
NEK3-210ENST00000620675 MECOMQ03112 1051 aa16.59■□□□□ 0.25
NEK3-210ENST00000620675 RBM26Q5T8P6 1007 aaKnown RBP16.59■□□□□ 0.25
NEK3-210ENST00000620675 TBC1D10BQ4KMP7 808 aaPredicted RBP16.58■□□□□ 0.25
NEK3-210ENST00000620675 ADGRA1Q86SQ6 560 aa16.58■□□□□ 0.25
NEK3-210ENST00000620675 DPF2Q92785 391 aa16.58■□□□□ 0.25
NEK3-210ENST00000620675 RAI14Q9P0K7 980 aa16.58■□□□□ 0.25
NEK3-210ENST00000620675 LRP2BPQ9P2M1 347 aa16.58■□□□□ 0.25
NEK3-210ENST00000620675 ASTN2O75129 1339 aaPredicted RBP16.58■□□□□ 0.24
NEK3-210ENST00000620675 MYO3BQ8WXR4 1341 aa16.58■□□□□ 0.24
NEK3-210ENST00000620675 POTEIP0CG38 1075 aa16.58■□□□□ 0.24
NEK3-210ENST00000620675 POTEJP0CG39 1038 aa16.58■□□□□ 0.24
NEK3-210ENST00000620675 RPS12P25398 132 aaKnown RBP16.58■□□□□ 0.24
NEK3-210ENST00000620675 HIRAP54198 1017 aaPredicted RBP16.58■□□□□ 0.24
NEK3-210ENST00000620675 TTC22Q5TAA0 569 aa16.58■□□□□ 0.24
NEK3-210ENST00000620675 ERICH6Q7L0X2 663 aa16.58■□□□□ 0.24
NEK3-210ENST00000620675 NSUN4Q96CB9 384 aaKnown RBP16.58■□□□□ 0.24
NEK3-210ENST00000620675 ZNF280AP59817 542 aaPredicted RBP16.57■□□□□ 0.24
NEK3-210ENST00000620675 SCAF8Q9UPN6 1271 aaKnown RBP16.57■□□□□ 0.24
NEK3-210ENST00000620675 DZIP1Q86YF9 867 aaKnown RBP16.56■□□□□ 0.24
NEK3-210ENST00000620675 MAGEB6Q8N7X4 407 aa16.56■□□□□ 0.24
NEK3-210ENST00000620675 MYOZ2Q9NPC6 264 aa16.56■□□□□ 0.24
NEK3-210ENST00000620675 HACL1Q9UJ83 578 aa16.56■□□□□ 0.24
NEK3-210ENST00000620675 TRIM6-TRIM34B2RNG4 842 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 EPHX2P34913 555 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 CRKP46108 304 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 NBPF9Q3BBW0 867 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 CFAP100Q494V2 611 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 ZGPATQ8N5A5 531 aaKnown RBP16.55■□□□□ 0.24
NEK3-210ENST00000620675 KBTBD3Q8NAB2 608 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 RILPL2Q969X0 211 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 PRMT6Q96LA8 375 aaPredicted RBP16.55■□□□□ 0.24
NEK3-210ENST00000620675 TAF1DQ9H5J8 278 aaPredicted RBP16.55■□□□□ 0.24
NEK3-210ENST00000620675 DAGLAQ9Y4D2 1042 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 PDE6AP16499 860 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 SDSP20132 328 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 SUGT1Q9Y2Z0 365 aa16.55■□□□□ 0.24
NEK3-210ENST00000620675 TCRBV5S4A2TA0A5A2 114 aa16.54■□□□□ 0.24
NEK3-210ENST00000620675 H7C1D1 291 aa16.54■□□□□ 0.24
NEK3-210ENST00000620675 LMOD1P29536 600 aaPredicted RBP16.54■□□□□ 0.24
NEK3-210ENST00000620675 RBM5P52756 815 aaKnown RBP eCLIP16.54■□□□□ 0.24
NEK3-210ENST00000620675 SLC9C2Q5TAH2 1124 aa16.54■□□□□ 0.24
NEK3-210ENST00000620675 SPTY2D1Q68D10 685 aaPredicted RBP16.54■□□□□ 0.24
NEK3-210ENST00000620675 OGFOD1Q8N543 542 aa16.54■□□□□ 0.24
NEK3-210ENST00000620675 ZNF784Q8NCA9 323 aaPredicted RBP16.54■□□□□ 0.24
NEK3-210ENST00000620675 WNT10BO00744 389 aa16.54■□□□□ 0.24
NEK3-210ENST00000620675 TTF1Q15361 905 aaPredicted RBP16.54■□□□□ 0.24
NEK3-210ENST00000620675 APOBEC3HQ6NTF7 200 aaKnown RBP16.54■□□□□ 0.24
NEK3-210ENST00000620675 ZBED3Q96IU2 234 aaPredicted RBP16.54■□□□□ 0.24
NEK3-210ENST00000620675 FSD1Q9BTV5 496 aa16.54■□□□□ 0.24
NEK3-210ENST00000620675 ZNF532Q9HCE3 1301 aa16.53■□□□□ 0.24
NEK3-210ENST00000620675 KIF4BQ2VIQ3 1234 aa16.53■□□□□ 0.24
NEK3-210ENST00000620675 NAA16Q6N069 864 aaPredicted RBP16.53■□□□□ 0.24
NEK3-210ENST00000620675 MIGA1Q8NAN2 632 aa16.53■□□□□ 0.24
NEK3-210ENST00000620675 TEKT1Q969V4 418 aa16.53■□□□□ 0.24
NEK3-210ENST00000620675 ADARB2Q9NS39 739 aaKnown RBP16.53■□□□□ 0.24
NEK3-210ENST00000620675 SERPINA10Q9UK55 444 aa16.53■□□□□ 0.24
NEK3-210ENST00000620675 BAZ2AQ9UIF9 1905 aaKnown RBP16.52■□□□□ 0.24
NEK3-210ENST00000620675 SPDYE2BA6NHP3 402 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 SPDYE6P0CI01 402 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 VEGFAP15692 232 aaPredicted RBP16.52■□□□□ 0.24
NEK3-210ENST00000620675 CYP7A1P22680 504 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 ADD2P35612 726 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 CACNB3P54284 484 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 MAP3K12Q12852 859 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 EAPPQ56P03 285 aaPredicted RBP16.52■□□□□ 0.24
NEK3-210ENST00000620675 EVI5LQ96CN4 794 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 GPBP1L1Q9HC44 474 aaPredicted RBP16.52■□□□□ 0.24
NEK3-210ENST00000620675 HDAC9Q9UKV0 1011 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 MROH7-TTC4A0A0A0MT08 1334 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 GAKO14976 1311 aa16.52■□□□□ 0.24
NEK3-210ENST00000620675 FOCADQ5VW36 1801 aa16.52■□□□□ 0.23
NEK3-210ENST00000620675 DYNLL1P63167 89 aaKnown RBP16.52■□□□□ 0.23
NEK3-210ENST00000620675 DLK2Q6UY11 383 aa16.52■□□□□ 0.23
NEK3-210ENST00000620675 SEC62Q99442 399 aaKnown RBP16.52■□□□□ 0.23
NEK3-210ENST00000620675 TDRD3Q9H7E2 651 aaKnown RBP16.52■□□□□ 0.23
NEK3-210ENST00000620675 CLRN2A0PK11 232 aa16.51■□□□□ 0.23
NEK3-210ENST00000620675 IQCA1LA6NCM1 817 aa16.51■□□□□ 0.23
NEK3-210ENST00000620675 DLGAP5Q15398 846 aa16.51■□□□□ 0.23
NEK3-210ENST00000620675 HHIPL2Q6UWX4 724 aa16.51■□□□□ 0.23
NEK3-210ENST00000620675 ZDHHC15Q96MV8 337 aa16.51■□□□□ 0.23
NEK3-210ENST00000620675 AATFQ9NY61 560 aaKnown RBP eCLIP16.51■□□□□ 0.23
NEK3-210ENST00000620675 KIF3CO14782 793 aa16.5■□□□□ 0.23
NEK3-210ENST00000620675 BTDP43251 543 aa16.5■□□□□ 0.23
NEK3-210ENST00000620675 CNTROBQ8N137 903 aa16.5■□□□□ 0.23
NEK3-210ENST00000620675 PUS7LQ9H0K6 701 aaKnown RBP16.5■□□□□ 0.23
NEK3-210ENST00000620675 MAST3O60307 1309 aa16.5■□□□□ 0.23
NEK3-210ENST00000620675 HDLBPQ00341 1268 aaKnown RBP16.5■□□□□ 0.23
NEK3-210ENST00000620675 MTMR14Q8NCE2 650 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms